RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 RTP1P59025 263 aa13.73□□□□□ -0.21
SQSTM1-203ENST00000422245 AAMPQ13685 434 aa13.73□□□□□ -0.21
SQSTM1-203ENST00000422245 LRIT3Q3SXY7 679 aa13.73□□□□□ -0.21
SQSTM1-203ENST00000422245 FAM47AQ5JRC9 791 aa13.73□□□□□ -0.21
SQSTM1-203ENST00000422245 GJC2Q5T442 439 aaPredicted RBP13.73□□□□□ -0.21
SQSTM1-203ENST00000422245 ANKRD45Q5TZF3 282 aa13.73□□□□□ -0.21
SQSTM1-203ENST00000422245 GPR153Q6NV75 609 aa13.73□□□□□ -0.21
SQSTM1-203ENST00000422245 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.73□□□□□ -0.211e-6■■□□□ 14.4
SQSTM1-203ENST00000422245 SLC38A10Q9HBR0 1119 aa13.73□□□□□ -0.21
SQSTM1-203ENST00000422245 CNPY2Q9Y2B0 182 aa13.73□□□□□ -0.21
SQSTM1-203ENST00000422245 SYNGAP1Q96PV0 1343 aa13.72□□□□□ -0.21
SQSTM1-203ENST00000422245 FDX1P10109 184 aa13.72□□□□□ -0.21
SQSTM1-203ENST00000422245 AKR1A1P14550 325 aa13.72□□□□□ -0.21
SQSTM1-203ENST00000422245 PDE1AP54750 535 aa13.72□□□□□ -0.21
SQSTM1-203ENST00000422245 TFAP4Q01664 338 aa13.72□□□□□ -0.21
SQSTM1-203ENST00000422245 SNX17Q15036 470 aa13.72□□□□□ -0.21
SQSTM1-203ENST00000422245 LRRC41Q15345 812 aa13.72□□□□□ -0.21
SQSTM1-203ENST00000422245 PRAMEF19Q5SWL8 479 aa13.72□□□□□ -0.21
SQSTM1-203ENST00000422245 ANO1Q5XXA6 986 aa13.72□□□□□ -0.21
SQSTM1-203ENST00000422245 SLFN13Q68D06 897 aa13.72□□□□□ -0.21
SQSTM1-203ENST00000422245 TICAM2Q86XR7 235 aa13.72□□□□□ -0.21
SQSTM1-203ENST00000422245 KIFC2Q96AC6 838 aa13.72□□□□□ -0.21
SQSTM1-203ENST00000422245 LRCH3Q96II8 777 aa13.72□□□□□ -0.21
SQSTM1-203ENST00000422245 XPNPEP3Q9NQH7 507 aa13.72□□□□□ -0.21
SQSTM1-203ENST00000422245 PRKAG2Q9UGJ0 569 aa13.72□□□□□ -0.21
SQSTM1-203ENST00000422245 FBXO40Q9UH90 709 aa13.72□□□□□ -0.21
SQSTM1-203ENST00000422245 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.72□□□□□ -0.215e-7■■■□□ 16.2
SQSTM1-203ENST00000422245 FOXP2O15409 715 aa13.71□□□□□ -0.21
SQSTM1-203ENST00000422245 MYCNP04198 464 aaPredicted RBP13.71□□□□□ -0.21
SQSTM1-203ENST00000422245 BMP3P12645 472 aa13.71□□□□□ -0.21
SQSTM1-203ENST00000422245 CCDC129Q6ZRS4 1044 aa13.71□□□□□ -0.21
SQSTM1-203ENST00000422245 ZNF467Q7Z7K2 595 aaPredicted RBP13.71□□□□□ -0.21
SQSTM1-203ENST00000422245 CPXCR1Q8N123 301 aa13.71□□□□□ -0.21
SQSTM1-203ENST00000422245 CHST13Q8NET6 341 aa13.71□□□□□ -0.21
SQSTM1-203ENST00000422245 DDX11Q96FC9 970 aa13.71□□□□□ -0.21
SQSTM1-203ENST00000422245 GMCL1Q96IK5 515 aa13.71□□□□□ -0.21
SQSTM1-203ENST00000422245 LBHD1Q9BQE6 289 aaPredicted RBP13.71□□□□□ -0.21
SQSTM1-203ENST00000422245 HELLSQ9NRZ9 838 aa13.71□□□□□ -0.21
SQSTM1-203ENST00000422245 ISY1Q9ULR0 285 aaKnown RBP13.71□□□□□ -0.21
SQSTM1-203ENST00000422245 PHF24Q9UPV7 400 aa13.71□□□□□ -0.21
SQSTM1-203ENST00000422245 ATP11BQ9Y2G3 1177 aa13.71□□□□□ -0.21
SQSTM1-203ENST00000422245 LAMA3Q16787 3333 aa13.71□□□□□ -0.21
SQSTM1-203ENST00000422245 LTBP2Q14767 1821 aa13.71□□□□□ -0.22
SQSTM1-203ENST00000422245 DNAJC25-GNG10A0A024R161 153 aa13.7□□□□□ -0.22
SQSTM1-203ENST00000422245 TSPY2A6NKD2 308 aa13.7□□□□□ -0.22
SQSTM1-203ENST00000422245 ZNF865P0CJ78 1059 aaPredicted RBP13.7□□□□□ -0.22
SQSTM1-203ENST00000422245 SLC1A4P43007 532 aa13.7□□□□□ -0.22
SQSTM1-203ENST00000422245 STAT2P52630 851 aa13.7□□□□□ -0.22
SQSTM1-203ENST00000422245 MDM2Q00987 491 aaPredicted RBP13.7□□□□□ -0.22
SQSTM1-203ENST00000422245 C1orf53Q5VUE5 145 aa13.7□□□□□ -0.22
SQSTM1-203ENST00000422245 MAMDC4Q6UXC1 1216 aa13.7□□□□□ -0.22
SQSTM1-203ENST00000422245 SLC39A5Q6ZMH5 540 aa13.7□□□□□ -0.22
SQSTM1-203ENST00000422245 RNF180Q86T96 592 aa13.7□□□□□ -0.22
SQSTM1-203ENST00000422245 FAM160B2Q86V87 743 aa13.7□□□□□ -0.22
SQSTM1-203ENST00000422245 RAVER2Q9HCJ3 691 aaKnown RBP13.7□□□□□ -0.22
SQSTM1-203ENST00000422245 ANAPC4Q9UJX5 808 aa13.7□□□□□ -0.22
SQSTM1-203ENST00000422245 RIPK3Q9Y572 518 aa13.7□□□□□ -0.22
SQSTM1-203ENST00000422245 SMCHD1A6NHR9 2005 aa13.69□□□□□ -0.22
SQSTM1-203ENST00000422245 TMEM232C9JQI7 657 aa13.69□□□□□ -0.22
SQSTM1-203ENST00000422245 ORC4O43929 436 aa13.69□□□□□ -0.22
SQSTM1-203ENST00000422245 TAL1P17542 331 aaPredicted RBP13.69□□□□□ -0.22
SQSTM1-203ENST00000422245 ADCYAP1R1P41586 468 aa13.69□□□□□ -0.22
SQSTM1-203ENST00000422245 ALX1Q15699 326 aa13.69□□□□□ -0.22
SQSTM1-203ENST00000422245 TRIM60Q495X7 471 aa13.69□□□□□ -0.22
SQSTM1-203ENST00000422245 ANKRD35Q8N283 1001 aa13.69□□□□□ -0.22
SQSTM1-203ENST00000422245 CHURC1Q8WUH1 139 aa13.69□□□□□ -0.22
SQSTM1-203ENST00000422245 STAG1Q8WVM7 1258 aa13.69□□□□□ -0.22
SQSTM1-203ENST00000422245 STX8Q9UNK0 236 aa13.69□□□□□ -0.22
SQSTM1-203ENST00000422245 ZMYM6O95789 1325 aa13.68□□□□□ -0.22
SQSTM1-203ENST00000422245 PLA2G6O60733 806 aa13.68□□□□□ -0.22
SQSTM1-203ENST00000422245 PGK1P00558 417 aa13.68□□□□□ -0.22
SQSTM1-203ENST00000422245 SLC4A3P48751 1232 aa13.68□□□□□ -0.22
SQSTM1-203ENST00000422245 CTDSPL2Q05D32 466 aa13.68□□□□□ -0.22
SQSTM1-203ENST00000422245 IKQ13123 557 aaPredicted RBP13.68□□□□□ -0.22
SQSTM1-203ENST00000422245 TKFCQ3LXA3 575 aa13.68□□□□□ -0.22
SQSTM1-203ENST00000422245 VPS53Q5VIR6 699 aa13.68□□□□□ -0.22
SQSTM1-203ENST00000422245 ACAD9Q9H845 621 aa13.68□□□□□ -0.22
SQSTM1-203ENST00000422245 ZHX1Q9UKY1 873 aaPredicted RBP13.68□□□□□ -0.22
SQSTM1-203ENST00000422245 FAM184BQ9ULE4 1060 aa13.68□□□□□ -0.22
SQSTM1-203ENST00000422245 A0A0D9SFI3 127 aa13.67□□□□□ -0.22
SQSTM1-203ENST00000422245 RANBP6O60518 1105 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-203ENST00000422245 ADAMTS4O75173 837 aa13.67□□□□□ -0.22
SQSTM1-203ENST00000422245 MCMDC2Q4G0Z9 681 aa13.67□□□□□ -0.22
SQSTM1-203ENST00000422245 SMC5Q8IY18 1101 aa13.67□□□□□ -0.22
SQSTM1-203ENST00000422245 FERMT2Q96AC1 680 aa13.67□□□□□ -0.22
SQSTM1-203ENST00000422245 LENG1Q96BZ8 264 aaPredicted RBP13.67□□□□□ -0.22
SQSTM1-203ENST00000422245 FAM227BQ96M60 508 aa13.67□□□□□ -0.22
SQSTM1-203ENST00000422245 TSEN34Q9BSV6 310 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-203ENST00000422245 LNPKQ9C0E8 428 aa13.67□□□□□ -0.22
SQSTM1-203ENST00000422245 PRDM5Q9NQX1 630 aaPredicted RBP13.67□□□□□ -0.22
SQSTM1-203ENST00000422245 PDLIM7Q9NR12 457 aa13.67□□□□□ -0.22
SQSTM1-203ENST00000422245 HOMER2Q9NSB8 354 aa13.67□□□□□ -0.22
SQSTM1-203ENST00000422245 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.67□□□□□ -0.22
SQSTM1-203ENST00000422245 SYNRGQ9UMZ2 1314 aa13.66□□□□□ -0.22
SQSTM1-203ENST00000422245 A0A1W2PQ45 241 aaPredicted RBP13.66□□□□□ -0.22
SQSTM1-203ENST00000422245 A0A1W2PQY0 241 aa13.66□□□□□ -0.22
SQSTM1-203ENST00000422245 MOXD2PA6NHM9 499 aa13.66□□□□□ -0.22
SQSTM1-203ENST00000422245 SNAI1O95863 264 aaPredicted RBP13.66□□□□□ -0.22
SQSTM1-203ENST00000422245 FGRP09769 529 aa13.66□□□□□ -0.22
SQSTM1-203ENST00000422245 MCCP23508 829 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms