RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 UBE2Q2LH0YL09 131 aa19.74■□□□□ 0.75
CCDC28B-202ENST00000421922 hCG_1984214I3L0E3 225 aa19.74■□□□□ 0.75
CCDC28B-202ENST00000421922 WDR46O15213 610 aaKnown RBP19.74■□□□□ 0.75
CCDC28B-202ENST00000421922 CYTH3O43739 400 aa19.74■□□□□ 0.75
CCDC28B-202ENST00000421922 NCLP19338 710 aaKnown RBP19.74■□□□□ 0.75
CCDC28B-202ENST00000421922 SLC16A2P36021 539 aa19.74■□□□□ 0.75
CCDC28B-202ENST00000421922 SPP2Q13103 211 aa19.74■□□□□ 0.75
CCDC28B-202ENST00000421922 SYDE2Q5VT97 1194 aa19.74■□□□□ 0.75
CCDC28B-202ENST00000421922 FAM160B2Q86V87 743 aa19.74■□□□□ 0.75
CCDC28B-202ENST00000421922 ADGRF4Q8IZF3 695 aa19.74■□□□□ 0.75
CCDC28B-202ENST00000421922 ZNF713Q8N859 430 aaPredicted RBP19.74■□□□□ 0.75
CCDC28B-202ENST00000421922 CHURC1Q8WUH1 139 aa19.74■□□□□ 0.75
CCDC28B-202ENST00000421922 PIGSQ96S52 555 aa19.74■□□□□ 0.75
CCDC28B-202ENST00000421922 SH3GLB2Q9NR46 395 aa19.74■□□□□ 0.75
CCDC28B-202ENST00000421922 TMOD4Q9NZQ9 345 aa19.74■□□□□ 0.75
CCDC28B-202ENST00000421922 BAG4O95429 457 aaKnown RBP19.73■□□□□ 0.75
CCDC28B-202ENST00000421922 MMP1P03956 469 aa19.73■□□□□ 0.75
CCDC28B-202ENST00000421922 CALML3P27482 149 aa19.73■□□□□ 0.75
CCDC28B-202ENST00000421922 NLRP5P59047 1200 aa19.73■□□□□ 0.75
CCDC28B-202ENST00000421922 RESTQ13127 1097 aa19.73■□□□□ 0.75
CCDC28B-202ENST00000421922 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.73■□□□□ 0.75
CCDC28B-202ENST00000421922 BRAPQ7Z569 592 aa19.73■□□□□ 0.75
CCDC28B-202ENST00000421922 GJB4Q9NTQ9 266 aa19.73■□□□□ 0.75
CCDC28B-202ENST00000421922 FEM1BQ9UK73 627 aa19.73■□□□□ 0.75
CCDC28B-202ENST00000421922 KCNJ14Q9UNX9 436 aa19.73■□□□□ 0.75
CCDC28B-202ENST00000421922 SNCAIPQ9Y6H5 919 aa19.73■□□□□ 0.75
CCDC28B-202ENST00000421922 DDX11L8A8MPP1 907 aa19.72■□□□□ 0.75
CCDC28B-202ENST00000421922 C19orf81C9J6K1 198 aa19.72■□□□□ 0.75
CCDC28B-202ENST00000421922 KRT2P35908 639 aa19.72■□□□□ 0.75
CCDC28B-202ENST00000421922 NAPAP54920 295 aa19.72■□□□□ 0.75
CCDC28B-202ENST00000421922 BACE1P56817 501 aa19.72■□□□□ 0.75
CCDC28B-202ENST00000421922 FSTL1Q12841 308 aa19.72■□□□□ 0.75
CCDC28B-202ENST00000421922 FAM177A1Q8N128 213 aaPredicted RBP19.72■□□□□ 0.75
CCDC28B-202ENST00000421922 GPKOWQ92917 476 aaPredicted RBP eCLIP19.72■□□□□ 0.75
CCDC28B-202ENST00000421922 TANGO6Q9C0B7 1094 aa19.72■□□□□ 0.75
CCDC28B-202ENST00000421922 ELP3Q9H9T3 547 aa19.72■□□□□ 0.75
CCDC28B-202ENST00000421922 JMJD4Q9H9V9 463 aa19.72■□□□□ 0.75
CCDC28B-202ENST00000421922 PNMA6FA0A0J9YX94 578 aa19.71■□□□□ 0.75
CCDC28B-202ENST00000421922 TRAF5O00463 557 aa19.71■□□□□ 0.75
CCDC28B-202ENST00000421922 PTMSP20962 102 aa19.71■□□□□ 0.75
CCDC28B-202ENST00000421922 KRT85P78386 507 aa19.71■□□□□ 0.75
CCDC28B-202ENST00000421922 KIF23Q02241 960 aaPredicted RBP19.71■□□□□ 0.75
CCDC28B-202ENST00000421922 CDC37Q16543 378 aaPredicted RBP19.71■□□□□ 0.75
CCDC28B-202ENST00000421922 MAP3K11Q16584 847 aa19.71■□□□□ 0.75
CCDC28B-202ENST00000421922 CSPP1Q1MSJ5 1256 aa19.71■□□□□ 0.75
CCDC28B-202ENST00000421922 WWC2Q6AWC2 1192 aa19.71■□□□□ 0.75
CCDC28B-202ENST00000421922 SAMD1Q6SPF0 538 aaPredicted RBP19.71■□□□□ 0.75
CCDC28B-202ENST00000421922 DIS3L2Q8IYB7 885 aaKnown RBP19.71■□□□□ 0.75
CCDC28B-202ENST00000421922 BARHL2Q9NY43 387 aa19.71■□□□□ 0.75
CCDC28B-202ENST00000421922 ZBTB5O15062 677 aa19.7■□□□□ 0.74
CCDC28B-202ENST00000421922 CAPN15O75808 1086 aa19.7■□□□□ 0.74
CCDC28B-202ENST00000421922 SLC35G1Q2M3R5 365 aa19.7■□□□□ 0.74
CCDC28B-202ENST00000421922 CHADLQ6NUI6 762 aa19.7■□□□□ 0.74
CCDC28B-202ENST00000421922 BTNL9Q6UXG8 535 aa19.7■□□□□ 0.74
CCDC28B-202ENST00000421922 ERO1BQ86YB8 467 aa19.7■□□□□ 0.74
CCDC28B-202ENST00000421922 ZNF396Q96N95 335 aaPredicted RBP19.7■□□□□ 0.74
CCDC28B-202ENST00000421922 PHF20Q9BVI0 1012 aa19.7■□□□□ 0.74
CCDC28B-202ENST00000421922 CTDP1Q9Y5B0 961 aaPredicted RBP19.7■□□□□ 0.74
CCDC28B-202ENST00000421922 HMGCS2P54868 508 aa19.69■□□□□ 0.74
CCDC28B-202ENST00000421922 FKBP1BP68106 108 aa19.69■□□□□ 0.74
CCDC28B-202ENST00000421922 TRAF1Q13077 416 aa19.69■□□□□ 0.74
CCDC28B-202ENST00000421922 NFKBIBQ15653 356 aa19.69■□□□□ 0.74
CCDC28B-202ENST00000421922 KIAA1755Q5JYT7 1200 aa19.69■□□□□ 0.74
CCDC28B-202ENST00000421922 GALNT17Q6IS24 598 aa19.69■□□□□ 0.74
CCDC28B-202ENST00000421922 PPP1R18Q6NYC8 613 aa19.69■□□□□ 0.74
CCDC28B-202ENST00000421922 CLEC17AQ6ZS10 378 aa19.69■□□□□ 0.74
CCDC28B-202ENST00000421922 MOB2Q70IA6 237 aa19.69■□□□□ 0.74
CCDC28B-202ENST00000421922 C2orf69Q8N8R5 385 aa19.69■□□□□ 0.74
CCDC28B-202ENST00000421922 KIFC2Q96AC6 838 aa19.69■□□□□ 0.74
CCDC28B-202ENST00000421922 FOXP1Q9H334 677 aaPredicted RBP19.69■□□□□ 0.74
CCDC28B-202ENST00000421922 C6orf50Q9HD87 102 aa19.69■□□□□ 0.74
CCDC28B-202ENST00000421922 TCHHQ07283 1943 aa19.69■□□□□ 0.74
CCDC28B-202ENST00000421922 TRPM7Q96QT4 1865 aa19.69■□□□□ 0.74
CCDC28B-202ENST00000421922 STXBP3O00186 592 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 PLA2G6O60733 806 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 VCAM1P19320 739 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 MCM4P33991 863 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 PPATQ06203 517 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 OTUD5Q96G74 571 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 GBA2Q9HCG7 927 aaPredicted RBP19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 PRR12Q9ULL5 1215 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 AFG3L2Q9Y4W6 797 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 PCNTO95613 3336 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 UNCXA6NJT0 531 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 CELF2O95319 508 aaKnown RBP19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 GNA11P29992 359 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 DNM1Q05193 864 aaKnown RBP19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 QRICH1Q2TAL8 776 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 BICD2Q8TD16 824 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 CLMNQ96JQ2 1002 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 SLF1Q9BQI6 1058 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 RPAP3Q9H6T3 665 aaPredicted RBP19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 EMILIN3Q9NT22 766 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 CFAP45Q9UL16 551 aa19.68■□□□□ 0.74
CCDC28B-202ENST00000421922 PTPRFP10586 1907 aa19.67■□□□□ 0.74
CCDC28B-202ENST00000421922 SPDYE5A6NIY4 337 aa19.67■□□□□ 0.74
CCDC28B-202ENST00000421922 FLOT1O75955 427 aa19.67■□□□□ 0.74
CCDC28B-202ENST00000421922 ATL3Q6DD88 541 aa19.67■□□□□ 0.74
CCDC28B-202ENST00000421922 FBXO11Q86XK2 927 aa19.67■□□□□ 0.74
CCDC28B-202ENST00000421922 NOSTRINQ8IVI9 506 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms