RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 SKOR2Q2VWA4 1001 aaPredicted RBP6.88□□□□□ -1.31
HMGB3-202ENST00000419110 FOXD4L6Q3SYB3 417 aaPredicted RBP6.88□□□□□ -1.31
HMGB3-202ENST00000419110 ANGEL2Q5VTE6 544 aaKnown RBP6.88□□□□□ -1.31
HMGB3-202ENST00000419110 KRT40Q6A162 431 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 ATL3Q6DD88 541 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 TATDN1Q6P1N9 297 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 FOXD4L3Q6VB84 417 aaPredicted RBP6.88□□□□□ -1.31
HMGB3-202ENST00000419110 SAMD7Q7Z3H4 446 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 TMEM87AQ8NBN3 555 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 FBXO18Q8NFZ0 1043 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 FEZ1Q99689 392 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 SCAND2PQ9GZW5 306 aaPredicted RBP6.88□□□□□ -1.31
HMGB3-202ENST00000419110 GOPCQ9HD26 462 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 FAM217BQ9NTX9 383 aaPredicted RBP6.88□□□□□ -1.31
HMGB3-202ENST00000419110 NYAP2Q9P242 653 aa6.88□□□□□ -1.31
HMGB3-202ENST00000419110 ELP1O95163 1332 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 IQCA1LA6NCM1 817 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 RAD21O60216 631 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 DTNBO60941 627 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 EGFRP00533 1210 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 MMP1P03956 469 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 SNHG28P0DPA3 235 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 FDPSP14324 419 aaKnown RBP6.87□□□□□ -1.31
HMGB3-202ENST00000419110 KRT2P35908 639 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 KIF23Q02241 960 aaPredicted RBP6.87□□□□□ -1.31
HMGB3-202ENST00000419110 ZNF543Q08ER8 600 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 SEPT2Q15019 361 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 PFKFB3Q16875 520 aaPredicted RBP6.87□□□□□ -1.31
HMGB3-202ENST00000419110 PPP1R18Q6NYC8 613 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 HEATR3Q7Z4Q2 680 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 NBPF11Q86T75 865 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 USP48Q86UV5 1035 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 GMCL1P1Q8NEA9 526 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 SYAP1Q96A49 352 aaPredicted RBP6.87□□□□□ -1.31
HMGB3-202ENST00000419110 RRP36Q96EU6 259 aaKnown RBP6.87□□□□□ -1.31
HMGB3-202ENST00000419110 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.87□□□□□ -1.31
HMGB3-202ENST00000419110 ZNF341Q9BYN7 854 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 MAD2L2Q9UI95 211 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 CFAP45Q9UL16 551 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 NOL7Q9UMY1 257 aaKnown RBP6.87□□□□□ -1.31
HMGB3-202ENST00000419110 CNPY2Q9Y2B0 182 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 RLFQ13129 1914 aa6.87□□□□□ -1.31
HMGB3-202ENST00000419110 ASTN2O75129 1339 aaPredicted RBP6.86□□□□□ -1.31
HMGB3-202ENST00000419110 FRMPD2Q68DX3 1309 aaPredicted RBP6.86□□□□□ -1.31
HMGB3-202ENST00000419110 PALM3A6NDB9 673 aaPredicted RBP6.86□□□□□ -1.31
HMGB3-202ENST00000419110 GOLGA6L4A6NEF3 574 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 USP17L5A8MUK1 530 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 KLRF2D3W0D1 207 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 EEF2P13639 858 aaKnown RBP6.86□□□□□ -1.31
HMGB3-202ENST00000419110 SMARCA1P28370 1054 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 NF2P35240 595 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 SLC1A4P43007 532 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 NAPAP54920 295 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 DNM1Q05193 864 aaKnown RBP6.86□□□□□ -1.31
HMGB3-202ENST00000419110 FUT2Q10981 343 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 IKQ13123 557 aaPredicted RBP6.86□□□□□ -1.31
HMGB3-202ENST00000419110 STK38Q15208 465 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 KLHL40Q2TBA0 621 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 MYSM1Q5VVJ2 828 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 SLFN13Q68D06 897 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 RASGRP2Q7LDG7 609 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 HOMER1Q86YM7 354 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 SULF1Q8IWU6 871 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 DIS3L2Q8IYB7 885 aaKnown RBP6.86□□□□□ -1.31
HMGB3-202ENST00000419110 CMTR1Q8N1G2 835 aaKnown RBP6.86□□□□□ -1.31
HMGB3-202ENST00000419110 CCDC82Q8N4S0 544 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 SRBD1Q8N5C6 995 aaKnown RBP6.86□□□□□ -1.31
HMGB3-202ENST00000419110 DCPSQ96C86 337 aaKnown RBP6.86□□□□□ -1.31
HMGB3-202ENST00000419110 GMCL1Q96IK5 515 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 SPATA32Q96LK8 384 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 AIFM3Q96NN9 605 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 DEFB129Q9H1M3 183 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 FOXP1Q9H334 677 aaPredicted RBP6.86□□□□□ -1.31
HMGB3-202ENST00000419110 SH3GLB2Q9NR46 395 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 VPS54Q9P1Q0 977 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 CLIP2Q9UDT6 1046 aa6.86□□□□□ -1.31
HMGB3-202ENST00000419110 DDX49Q9Y6V7 483 aaKnown RBP6.86□□□□□ -1.31
HMGB3-202ENST00000419110 LRRC37A2A6NM11 1700 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 TRAK2O60296 914 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 DDNO94850 711 aaPredicted RBP6.85□□□□□ -1.31
HMGB3-202ENST00000419110 YEATS4O95619 227 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 BMP15O95972 392 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 NDUFB10O96000 172 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 GOLGA8HP0CJ92 632 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 GUCY1A2P33402 732 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 CAP2P40123 477 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 EPS15P42566 896 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 UBE2HP62256 183 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 SUPT20HL1Q3ZLR7 823 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 OTUD7BQ6GQQ9 843 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 GALNT17Q6IS24 598 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 ADGRD1Q6QNK2 874 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 USP17L2Q6R6M4 530 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 USP50Q70EL3 339 aaPredicted RBP6.85□□□□□ -1.31
HMGB3-202ENST00000419110 NOSTRINQ8IVI9 506 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 STAG2Q8N3U4 1231 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 JMYQ8N9B5 988 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 BICD2Q8TD16 824 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 KCNG4Q8TDN1 519 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 PIBF1Q8WXW3 757 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms