RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 ZSCAN10Q96SZ4 725 aaPredicted RBP6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 CDC5LQ99459 802 aaKnown RBP6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 UBAC1Q9BSL1 405 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 TSGA10Q9BZW7 698 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 CCSER1Q9C0I3 900 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 KDM4CQ9H3R0 1056 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 CABP5Q9NP86 173 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 ZNHIT6Q9NWK9 470 aaKnown RBP6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 KCNJ14Q9UNX9 436 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 NHSQ6T4R5 1651 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 EIF3CLB5ME19 914 aaKnown RBP6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 RXRAP19793 462 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 MAGEA9P43362 315 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 DNM2P50570 870 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 VSNL1P62760 191 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 AKAP17AQ02040 695 aaKnown RBP6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 CTDSPL2Q05D32 466 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 USP49Q70CQ1 688 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 RAB11FIP4Q86YS3 637 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 ADSSL1Q8N142 457 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 CCDC155Q8N6L0 562 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 C4orf32Q8N8J7 132 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 OXER1Q8TDS5 423 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 DHTKD1Q96HY7 919 aaPredicted RBP6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 EIF3CQ99613 913 aaKnown RBP6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 PDE11AQ9HCR9 933 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 REXO2Q9Y3B8 237 aaKnown RBP6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 TNKSO95271 1327 aa6.46□□□□□ -1.38
CCDC88A-203ENST00000412148 MYH14Q7Z406 1995 aaKnown RBP6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 SRRM3A6NNA2 597 aaPredicted RBP6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 KCNJ18B7U540 433 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 M0R2N6 131 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 N4BP3O15049 544 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 PPFIA4O75335 1185 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 RHOBTB3O94955 611 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 SRGNP10124 158 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 EPB41P11171 864 aaKnown RBP6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 IRF5Q13568 498 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 KCNJ12Q14500 433 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 ZNF827Q17R98 1081 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 SBK1Q52WX2 424 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 PARP10Q53GL7 1025 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 HSP90B2PQ58FF3 399 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 GBP6Q6ZN66 633 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 CATIPQ7Z7H3 387 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 IRF2BP1Q8IU81 584 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 ZSCAN29Q8IWY8 852 aaPredicted RBP6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 LCORLQ8N3X6 602 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 MMGT1Q8N4V1 131 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 MB21D1Q8N884 522 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 ENAHQ8N8S7 591 aaPredicted RBP6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 COG1Q8WTW3 980 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 EPSTI1Q96J88 318 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 RIOK1Q9BRS2 568 aaKnown RBP6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 MYL10Q9BUA6 226 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 ZCCHC17Q9NP64 241 aaKnown RBP6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 LZTFL1Q9NQ48 299 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 RRP15Q9Y3B9 282 aaKnown RBP6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 SLC4A4Q9Y6R1 1079 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 ROBO3Q96MS0 1386 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 COL16A1Q07092 1604 aaPredicted RBP6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 TDO2P48775 406 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 CORO7P57737 925 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 CHRNA2Q15822 529 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 PFKFB3Q16875 520 aaPredicted RBP6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 TOM1L2Q6ZVM7 507 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 DNAJC10Q8IXB1 793 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 ERGIC2Q96RQ1 377 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 IRX2Q9BZI1 471 aaPredicted RBP6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 EDEM3Q9BZQ6 932 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 EPC1Q9H2F5 836 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 ARMT1Q9H993 441 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 KBTBD4Q9NVX7 518 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 SAR1BQ9Y6B6 198 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 ATP8B3O60423 1300 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 C10orf71Q711Q0 1435 aa6.45□□□□□ -1.38
CCDC88A-203ENST00000412148 UBE2Q2LH0YL09 131 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 KRT86O43790 486 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 SYF2O95926 243 aaKnown RBP6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 RPN1P04843 607 aaKnown RBP6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 KRT9P35527 623 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 NNTQ13423 1086 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 HLFQ16534 295 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 CCDC178Q5BJE1 867 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 SPECC1Q5M775 1068 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 WWC2Q6AWC2 1192 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 CNNM4Q6P4Q7 775 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 IQCA1Q86XH1 822 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 FAM114A1Q8IWE2 563 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 AMOTL1Q8IY63 956 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 GRAMD1CQ8IYS0 662 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 GOLGA6L1Q8N7Z2 621 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 EIF1ADQ8N9N8 165 aaKnown RBP6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 GIMAP8Q8ND71 665 aaPredicted RBP6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 AK8Q96MA6 479 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 MTRQ99707 1265 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 SH3GL2Q99962 352 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 YY1AP1Q9H869 796 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 HPCAL4Q9UM19 191 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms