RNA–Protein interactions for RNA: ENST00000409323.1

CHRNA1-204, Transcript of cholinergic receptor nicotinic alpha 1 subunit, humanhuman

TSL 1 (best) BASIC

Gene CHRNA1, Length 1,585 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1-204ENST00000409323 USP17L11C9JVI0 530 aa16.4■□□□□ 0.22
CHRNA1-204ENST00000409323 USP17L18D6R9N7 530 aa16.4■□□□□ 0.22
CHRNA1-204ENST00000409323 USP17L22D6RA61 530 aa16.4■□□□□ 0.22
CHRNA1-204ENST00000409323 USP17L17D6RBQ6 530 aa16.4■□□□□ 0.22
CHRNA1-204ENST00000409323 USP17L19D6RCP7 530 aa16.4■□□□□ 0.22
CHRNA1-204ENST00000409323 USP17L20D6RJB6 530 aa16.4■□□□□ 0.22
CHRNA1-204ENST00000409323 K7ELQ4 463 aaPredicted RBP16.4■□□□□ 0.22
CHRNA1-204ENST00000409323 KIF5BP33176 963 aa16.4■□□□□ 0.22
CHRNA1-204ENST00000409323 IRX3P78415 501 aaPredicted RBP16.4■□□□□ 0.22
CHRNA1-204ENST00000409323 USP17L24Q0WX57 530 aa16.4■□□□□ 0.22
CHRNA1-204ENST00000409323 NOGQ13253 232 aa16.4■□□□□ 0.22
CHRNA1-204ENST00000409323 P2RX7Q99572 595 aaKnown RBP16.4■□□□□ 0.22
CHRNA1-204ENST00000409323 SMCHD1A6NHR9 2005 aa16.4■□□□□ 0.22
CHRNA1-204ENST00000409323 MYH6P13533 1939 aa16.4■□□□□ 0.22
CHRNA1-204ENST00000409323 CPLX1O14810 134 aa16.39■□□□□ 0.21
CHRNA1-204ENST00000409323 JAK2O60674 1132 aa16.39■□□□□ 0.21
CHRNA1-204ENST00000409323 ECM2O94769 699 aaPredicted RBP16.39■□□□□ 0.21
CHRNA1-204ENST00000409323 CTDNEP1O95476 244 aa16.39■□□□□ 0.21
CHRNA1-204ENST00000409323 GPATCH4Q5T3I0 446 aaKnown RBP16.39■□□□□ 0.21
CHRNA1-204ENST00000409323 SYDE2Q5VT97 1194 aa16.39■□□□□ 0.21
CHRNA1-204ENST00000409323 CCDC174Q6PII3 467 aa16.39■□□□□ 0.21
CHRNA1-204ENST00000409323 IFNL1Q8IU54 200 aa16.39■□□□□ 0.21
CHRNA1-204ENST00000409323 ADGRF4Q8IZF3 695 aa16.39■□□□□ 0.21
CHRNA1-204ENST00000409323 SNX21Q969T3 373 aa16.39■□□□□ 0.21
CHRNA1-204ENST00000409323 DDX11Q96FC9 970 aa16.39■□□□□ 0.21
CHRNA1-204ENST00000409323 ZSCAN31Q96LW9 406 aaPredicted RBP16.39■□□□□ 0.21
CHRNA1-204ENST00000409323 SLF1Q9BQI6 1058 aa16.39■□□□□ 0.21
CHRNA1-204ENST00000409323 FEM1BQ9UK73 627 aa16.39■□□□□ 0.21
CHRNA1-204ENST00000409323 PRR12Q9ULL5 1215 aa16.39■□□□□ 0.21
CHRNA1-204ENST00000409323 CNTNAP5Q8WYK1 1306 aa16.39■□□□□ 0.21
CHRNA1-204ENST00000409323 MCM2P49736 904 aa16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 FOSBP53539 338 aa16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 NTRK3Q16288 839 aa16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 POTEEQ6S8J3 1075 aa16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 PIGSQ96S52 555 aa16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 SLC26A6Q9BXS9 759 aa16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 SH2B1Q9NRF2 756 aaPredicted RBP16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 RBM28Q9NW13 759 aaKnown RBP16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 NID2Q14112 1375 aa16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 TESPA1A2RU30 521 aaPredicted RBP16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 SPDYE16A6NNV3 312 aaPredicted RBP16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 FUT2Q10981 343 aa16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 SREBF2Q12772 1141 aa16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 COG2Q14746 738 aa16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 ANKRD23Q86SG2 305 aa16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 CPXCR1Q8N123 301 aa16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 MAP3K14Q99558 947 aa16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 PAGR1Q9BTK6 254 aa16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 JMJD4Q9H9V9 463 aa16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 PPP1R9AQ9ULJ8 1098 aa16.38■□□□□ 0.21
CHRNA1-204ENST00000409323 OSBPP22059 807 aa16.37■□□□□ 0.21
CHRNA1-204ENST00000409323 HOXA7P31268 230 aaPredicted RBP16.37■□□□□ 0.21
CHRNA1-204ENST00000409323 DSG3P32926 999 aa16.37■□□□□ 0.21
CHRNA1-204ENST00000409323 ANP32AP39687 249 aaKnown RBP16.37■□□□□ 0.21
CHRNA1-204ENST00000409323 RCAN1P53805 252 aa16.37■□□□□ 0.21
CHRNA1-204ENST00000409323 CHURC1Q8WUH1 139 aa16.37■□□□□ 0.21
CHRNA1-204ENST00000409323 AIFM3Q96NN9 605 aa16.37■□□□□ 0.21
CHRNA1-204ENST00000409323 V9GY48 417 aaPredicted RBP16.37■□□□□ 0.21
CHRNA1-204ENST00000409323 CCDC196A0A1B0GTZ2 297 aa16.36■□□□□ 0.21
CHRNA1-204ENST00000409323 PTPDC1A2A3K4 754 aa16.36■□□□□ 0.21
CHRNA1-204ENST00000409323 GNAQP50148 359 aa16.36■□□□□ 0.21
CHRNA1-204ENST00000409323 HERVK_113P62684 666 aa16.36■□□□□ 0.21
CHRNA1-204ENST00000409323 TAF1CQ15572 869 aaPredicted RBP16.36■□□□□ 0.21
CHRNA1-204ENST00000409323 CDC37Q16543 378 aaPredicted RBP16.36■□□□□ 0.21
CHRNA1-204ENST00000409323 BTNL9Q6UXG8 535 aa16.36■□□□□ 0.21
CHRNA1-204ENST00000409323 FAM160B2Q86V87 743 aa16.36■□□□□ 0.21
CHRNA1-204ENST00000409323 PRPF38AQ8NAV1 312 aaKnown RBP16.36■□□□□ 0.21
CHRNA1-204ENST00000409323 NSUN7Q8NE18 718 aaKnown RBP16.36■□□□□ 0.21
CHRNA1-204ENST00000409323 SMCR8Q8TEV9 937 aaPredicted RBP16.36■□□□□ 0.21
CHRNA1-204ENST00000409323 RAVER2Q9HCJ3 691 aaKnown RBP16.36■□□□□ 0.21
CHRNA1-204ENST00000409323 TXNRD2Q9NNW7 524 aa16.36■□□□□ 0.21
CHRNA1-204ENST00000409323 VWA5AO00534 786 aa16.35■□□□□ 0.21
CHRNA1-204ENST00000409323 TM4SF4P48230 202 aa16.35■□□□□ 0.21
CHRNA1-204ENST00000409323 PABPC4Q13310 644 aaKnown RBP eCLIP16.35■□□□□ 0.21
CHRNA1-204ENST00000409323 PLS1Q14651 629 aa16.35■□□□□ 0.21
CHRNA1-204ENST00000409323 QRICH1Q2TAL8 776 aa16.35■□□□□ 0.21
CHRNA1-204ENST00000409323 USH1GQ495M9 461 aa16.35■□□□□ 0.21
CHRNA1-204ENST00000409323 GPKOWQ92917 476 aaPredicted RBP eCLIP16.35■□□□□ 0.21
CHRNA1-204ENST00000409323 R3HDMLQ9H3Y0 253 aa16.35■□□□□ 0.21
CHRNA1-204ENST00000409323 RIOX1Q9H6W3 641 aa16.35■□□□□ 0.21
CHRNA1-204ENST00000409323 BTBD7Q9P203 1132 aa16.35■□□□□ 0.21
CHRNA1-204ENST00000409323 PCNTO95613 3336 aa16.35■□□□□ 0.21
CHRNA1-204ENST00000409323 PPP1R11O60927 126 aaPredicted RBP16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 IFNAR1P17181 557 aa16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 SSRP1Q08945 709 aaKnown RBP16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 ANKRD13CQ8N6S4 541 aa16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 AGBL1Q96MI9 1066 aa16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 SPZ1Q9BXG8 430 aa16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 CPA4Q9UI42 421 aa16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 CTDP1Q9Y5B0 961 aaPredicted RBP16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 TBC1D8O95759 1140 aa16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 INHBEP58166 350 aa16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 CRHR2Q13324 411 aa16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 TMEM132BQ14DG7 1078 aa16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 COA7Q96BR5 231 aa16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 RRP36Q96EU6 259 aaKnown RBP16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 PARK7Q99497 189 aaKnown RBP16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 LZTS2Q9BRK4 669 aa16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 HOMER2Q9NSB8 354 aa16.34■□□□□ 0.21
CHRNA1-204ENST00000409323 GJB4Q9NTQ9 266 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms