RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 MRPL11Q9Y3B7 192 aaKnown RBP6.69□□□□□ -1.34
SCN1A-203ENST00000409050 ABCC4O15439 1325 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 GPAA1O43292 621 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 PRPSAP1Q14558 356 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 PNMA8AQ86V59 439 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-203ENST00000409050 NOSTRINQ8IVI9 506 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.69□□□□□ -1.34
SCN1A-203ENST00000409050 HAUS7Q99871 368 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 ARMCX3Q9UH62 379 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-203ENST00000409050 CCPG1Q9ULG6 757 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 MAST1Q9Y2H9 1570 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 ERVV-2B6SEH9 535 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 PYGBP11216 843 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 U2AF2P26368 475 aaKnown RBP eCLIP6.69□□□□□ -1.341e-6■■■□□ 14.9
SCN1A-203ENST00000409050 RPS6KA2Q15349 733 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 CCDC17Q96LX7 622 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 SERPINI1Q99574 410 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 TRIM15Q9C019 465 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 FOXP1Q9H334 677 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-203ENST00000409050 ZSWIM6Q9HCJ5 1215 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 ANGPTL2Q9UKU9 493 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 KCNJ18B7U540 433 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 CCNT1O60563 726 aaKnown RBP6.68□□□□□ -1.34
SCN1A-203ENST00000409050 KCNJ12Q14500 433 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 PIK3AP1Q6ZUJ8 805 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 RAB44Q7Z6P3 723 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-203ENST00000409050 BICC1Q9H694 974 aaKnown RBP6.68□□□□□ -1.34
SCN1A-203ENST00000409050 ATG3Q9NT62 314 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 STAP2Q9UGK3 403 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 GGA1Q9UJY5 639 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 PPP2R2CQ9Y2T4 447 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 GOLGA8MH3BSY2 632 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 WDR46O15213 610 aaKnown RBP6.68□□□□□ -1.34
SCN1A-203ENST00000409050 CIAO1O76071 339 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 TNNC2P02585 160 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 ATF2P15336 505 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 NFKBIAP25963 317 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 PDE6CP51160 858 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 RCAN1P53805 252 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 GNGT1P63211 74 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 PPP2R5DQ14738 602 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 SLFNL1Q499Z3 407 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 TTLL7Q6ZT98 887 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 LRRC8CQ8TDW0 803 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 SSH3Q8TE77 659 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 TTC1Q99614 292 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 C1orf112Q9NSG2 853 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 PPP1R9AQ9ULJ8 1098 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 MED23Q9ULK4 1368 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 WDR17Q8IZU2 1322 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 SKIP12755 728 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 HOXC9P31274 260 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 CAV1Q03135 178 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 CUL1Q13616 776 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 UBE3CQ15386 1083 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 BZW1Q7L1Q6 419 aaKnown RBP6.68□□□□□ -1.34
SCN1A-203ENST00000409050 RSPH3Q86UC2 560 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 RNF34Q969K3 372 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 VPS37BQ9H9H4 285 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.68□□□□□ -1.343e-7■■■□□ 19
SCN1A-203ENST00000409050 TNNQ9UQP3 1299 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 KDRP35968 1356 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 ABCC12Q96J65 1359 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 USP19O94966 1318 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 DNMT1P26358 1616 aaKnown RBP6.68□□□□□ -1.34
SCN1A-203ENST00000409050 SMIM23A6NLE4 172 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 CCDC188H7C350 402 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 KRIT1O00522 736 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 IGBP1P78318 339 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 MORC3Q14149 939 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 UAP1Q16222 522 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-203ENST00000409050 NBPF10Q6P3W6 841 aaKnown RBP6.68□□□□□ -1.34
SCN1A-203ENST00000409050 ARHGAP18Q8N392 663 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 LRRC2Q9BYS8 371 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 POLR3EQ9NVU0 708 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 PACSIN2Q9UNF0 486 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-203ENST00000409050 MFAP3P55082 362 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 EMBQ6PCB8 327 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 CCDC13Q8IYE1 715 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 XAGE2Q96GT9 111 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 MXD3Q9BW11 206 aa6.68□□□□□ -1.34
SCN1A-203ENST00000409050 V9GY48 417 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-203ENST00000409050 FAM83GA6ND36 823 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 NR1I2O75469 434 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 OR52Z1P0C646 297 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 ERCC3P19447 782 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 STX1BP61266 288 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 COG7P83436 770 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 BLIDQ8IZY5 108 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 STAG1Q8WVM7 1258 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 LRRC59Q96AG4 307 aaKnown RBP6.67□□□□□ -1.34
SCN1A-203ENST00000409050 RILPQ96NA2 401 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 ORC6Q9Y5N6 252 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 ZBTB24O43167 697 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-203ENST00000409050 HNRNPCL1O60812 293 aaKnown RBP6.67□□□□□ -1.34
SCN1A-203ENST00000409050 STAM2O75886 525 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 GCKRQ14397 625 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 RASEFQ8IZ41 740 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 MYCT1Q8N699 235 aa6.67□□□□□ -1.34
SCN1A-203ENST00000409050 LRGUKQ96M69 825 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms