RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 TCHHQ07283 1943 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 PITPNM2Q9BZ72 1349 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 ZC3H4Q9UPT8 1303 aaKnown RBP4.27□□□□□ -1.73
RTN4-208ENST00000404909 SPP2Q13103 211 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 MTMR2Q13614 643 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 CSPP1Q1MSJ5 1256 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 MAP1SQ66K74 1059 aaPredicted RBP4.27□□□□□ -1.73
RTN4-208ENST00000404909 SCYL3Q8IZE3 742 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 RASGRP4Q8TDF6 673 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 KIFC2Q96AC6 838 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 KLRG1Q96E93 195 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 GMCL1Q96IK5 515 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 PHF20Q9BVI0 1012 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 RIOX1Q9H6W3 641 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 VCPKMTQ9H867 229 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 RRAGCQ9HB90 399 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 BARHL2Q9NY43 387 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 CLIC4Q9Y696 253 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 FAM205CA6NFA0 338 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 POTECB2RU33 542 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 STXBP3O00186 592 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 PTMSP20962 102 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 U2AF2P26368 475 aaKnown RBP eCLIP4.26□□□□□ -1.737e-8■■□□□ 13
RTN4-208ENST00000404909 NF2P35240 595 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 ME1P48163 572 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 STAT2P52630 851 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 SF3A1Q15459 793 aaKnown RBP4.26□□□□□ -1.73
RTN4-208ENST00000404909 USH1GQ495M9 461 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 MOB2Q70IA6 237 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 PNMA8AQ86V59 439 aaPredicted RBP4.26□□□□□ -1.73
RTN4-208ENST00000404909 ZC3H15Q8WU90 426 aaKnown RBP4.26□□□□□ -1.73
RTN4-208ENST00000404909 LEO1Q8WVC0 666 aaPredicted RBP4.26□□□□□ -1.73
RTN4-208ENST00000404909 FOXP1Q9H334 677 aaPredicted RBP4.26□□□□□ -1.73
RTN4-208ENST00000404909 MYH4Q9Y623 1939 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 PNMA6FA0A0J9YX94 578 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 SMCO2A6NFE2 343 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 ZBTB5O15062 677 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 ADAMTS3O15072 1205 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 USP2O75604 605 aaPredicted RBP4.26□□□□□ -1.73
RTN4-208ENST00000404909 PTPRAP18433 802 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 CALML3P27482 149 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 SMARCA1P28370 1054 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 STK38Q15208 465 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 CDC37Q16543 378 aaPredicted RBP4.26□□□□□ -1.73
RTN4-208ENST00000404909 NOM1Q5C9Z4 860 aaKnown RBP4.26□□□□□ -1.73
RTN4-208ENST00000404909 EARS2Q5JPH6 523 aaKnown RBP4.26□□□□□ -1.73
RTN4-208ENST00000404909 SYDE2Q5VT97 1194 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 PIK3AP1Q6ZUJ8 805 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 CCDC148Q8NFR7 591 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 CCDC12Q8WUD4 166 aaPredicted RBP4.26□□□□□ -1.73
RTN4-208ENST00000404909 CDCA5Q96FF9 252 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 TANGO6Q9C0B7 1094 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 FBXO28Q9NVF7 368 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 MYH6P13533 1939 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 TAL1P17542 331 aaPredicted RBP4.26□□□□□ -1.73
RTN4-208ENST00000404909 MARCKSP29966 332 aaPredicted RBP4.26□□□□□ -1.73
RTN4-208ENST00000404909 IREB2P48200 963 aaKnown RBP4.26□□□□□ -1.73
RTN4-208ENST00000404909 HMGCS2P54868 508 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 FMR1Q06787 632 aaKnown RBP eCLIP4.26□□□□□ -1.735e-11■□□□□ 8.4
RTN4-208ENST00000404909 QRICH1Q2TAL8 776 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 SKOR2Q2VWA4 1001 aaPredicted RBP4.26□□□□□ -1.73
RTN4-208ENST00000404909 CAVIN1Q6NZI2 390 aaKnown RBP4.26□□□□□ -1.73
RTN4-208ENST00000404909 CCDC174Q6PII3 467 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 BLIDQ8IZY5 108 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 ZNF280CQ8ND82 737 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 GPT2Q8TD30 523 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 SH3GLB2Q9NR46 395 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 PRR12Q9ULL5 1215 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 PCDHA4Q9UN74 947 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 PCDHA1Q9Y5I3 950 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 CSADQ9Y600 493 aa4.26□□□□□ -1.73
RTN4-208ENST00000404909 CCDC194A0A1B0GVG4 234 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 TRAF5O00463 557 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 PPP1R11O60927 126 aaPredicted RBP4.25□□□□□ -1.73
RTN4-208ENST00000404909 UBE2HP62256 183 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 MAP3K9P80192 1104 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 VGLL4Q14135 290 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 NPY5RQ15761 445 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 ANO1Q5XXA6 986 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.25□□□□□ -1.732e-32■□□□□ 11.2
RTN4-208ENST00000404909 BICD2Q8TD16 824 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 CNKSR2Q8WXI2 1034 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 AS3MTQ9HBK9 375 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 C6orf50Q9HD87 102 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 BIN2Q9UBW5 565 aaPredicted RBP4.25□□□□□ -1.73
RTN4-208ENST00000404909 ZNF112Q9UJU3 913 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 GREB1LQ9C091 1923 aaPredicted RBP4.25□□□□□ -1.73
RTN4-208ENST00000404909 SSC5DA1L4H1 1573 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 FLOT1O75955 427 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 GNA11P29992 359 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 BACE1P56817 501 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 KLHL40Q2TBA0 621 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 RILPL1Q5EBL4 403 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 JAKMIP3Q5VZ66 844 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.25□□□□□ -1.73
RTN4-208ENST00000404909 TMEM87AQ8NBN3 555 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 CHURC1Q8WUH1 139 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 CLMNQ96JQ2 1002 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 KIAA1683Q9H0B3 1180 aa4.25□□□□□ -1.73
RTN4-208ENST00000404909 ELP3Q9H9T3 547 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms