RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 APPBP2Q92624 585 aa34.01■■■■□ 3.03
HMGB1-205ENST00000399494 ROBO3Q96MS0 1386 aa34■■■■□ 3.03
HMGB1-205ENST00000399494 RNF180Q86T96 592 aa34■■■■□ 3.03
HMGB1-205ENST00000399494 PRPF38AQ8NAV1 312 aaKnown RBP34■■■■□ 3.03
HMGB1-205ENST00000399494 RIPK3Q9Y572 518 aa34■■■■□ 3.03
HMGB1-205ENST00000399494 PLXNA1Q9UIW2 1896 aa33.99■■■■□ 3.03
HMGB1-205ENST00000399494 IGKV6D-41A0A0C4DH26 115 aa33.99■■■■□ 3.03
HMGB1-205ENST00000399494 NDUFB10O96000 172 aa33.99■■■■□ 3.03
HMGB1-205ENST00000399494 IGHDP01880 384 aa33.99■■■■□ 3.03
HMGB1-205ENST00000399494 TSHZ3Q63HK5 1081 aa33.99■■■■□ 3.03
HMGB1-205ENST00000399494 TEX13BQ9BXU2 312 aa33.99■■■■□ 3.03
HMGB1-205ENST00000399494 CLIP2Q9UDT6 1046 aa33.99■■■■□ 3.03
HMGB1-205ENST00000399494 AKR1A1P14550 325 aa33.98■■■■□ 3.03
HMGB1-205ENST00000399494 SNRNP48Q6IEG0 339 aaKnown RBP33.98■■■■□ 3.03
HMGB1-205ENST00000399494 MKL1Q969V6 931 aa33.98■■■■□ 3.03
HMGB1-205ENST00000399494 FAM161BQ96MY7 647 aa33.98■■■■□ 3.03
HMGB1-205ENST00000399494 EPB41L4AQ9HCS5 686 aaPredicted RBP33.98■■■■□ 3.03
HMGB1-205ENST00000399494 TACC3Q9Y6A5 838 aa33.98■■■■□ 3.03
HMGB1-205ENST00000399494 TTC41PQ6P2S7 1318 aa33.98■■■■□ 3.03
HMGB1-205ENST00000399494 ATP2A1O14983 1001 aa33.97■■■■□ 3.03
HMGB1-205ENST00000399494 B4GALNT3Q6L9W6 998 aa33.97■■■■□ 3.03
HMGB1-205ENST00000399494 SMC5Q8IY18 1101 aa33.97■■■■□ 3.03
HMGB1-205ENST00000399494 MSL3Q8N5Y2 521 aaKnown RBP33.97■■■■□ 3.03
HMGB1-205ENST00000399494 CNPY2Q9Y2B0 182 aa33.97■■■■□ 3.03
HMGB1-205ENST00000399494 DNAJC25-GNG10A0A024R161 153 aa33.96■■■■□ 3.03
HMGB1-205ENST00000399494 ERC2O15083 957 aa33.96■■■■□ 3.03
HMGB1-205ENST00000399494 GPAA1O43292 621 aa33.96■■■■□ 3.03
HMGB1-205ENST00000399494 SNAI1O95863 264 aaPredicted RBP33.96■■■■□ 3.03
HMGB1-205ENST00000399494 ZFYP08048 801 aaPredicted RBP33.96■■■■□ 3.03
HMGB1-205ENST00000399494 MX1P20591 662 aa33.96■■■■□ 3.03
HMGB1-205ENST00000399494 ITGB8P26012 769 aa33.96■■■■□ 3.03
HMGB1-205ENST00000399494 OTUD7AQ8TE49 926 aaPredicted RBP33.96■■■■□ 3.03
HMGB1-205ENST00000399494 ADAMTS4O75173 837 aa33.95■■■■□ 3.03
HMGB1-205ENST00000399494 GNAT2P19087 354 aa33.95■■■■□ 3.03
HMGB1-205ENST00000399494 MAMDC4Q6UXC1 1216 aa33.95■■■■□ 3.03
HMGB1-205ENST00000399494 ZNF444Q8N0Y2 327 aaPredicted RBP33.95■■■■□ 3.03
HMGB1-205ENST00000399494 LENG1Q96BZ8 264 aaPredicted RBP33.95■■■■□ 3.03
HMGB1-205ENST00000399494 DDX11Q96FC9 970 aa33.95■■■■□ 3.03
HMGB1-205ENST00000399494 A0A1W2PQ45 241 aaPredicted RBP33.94■■■■□ 3.02
HMGB1-205ENST00000399494 A0A1W2PQY0 241 aa33.94■■■■□ 3.02
HMGB1-205ENST00000399494 M0R2C6 588 aa33.94■■■■□ 3.02
HMGB1-205ENST00000399494 ZNF697Q5TEC3 545 aa33.94■■■■□ 3.02
HMGB1-205ENST00000399494 TSEN34Q9BSV6 310 aaKnown RBP33.94■■■■□ 3.02
HMGB1-205ENST00000399494 PATL2C9JE40 543 aaKnown RBP33.93■■■■□ 3.02
HMGB1-205ENST00000399494 ZBED4O75132 1171 aa33.93■■■■□ 3.02
HMGB1-205ENST00000399494 PRDM1O75626 825 aa33.93■■■■□ 3.02
HMGB1-205ENST00000399494 CLTBP09497 229 aa33.93■■■■□ 3.02
HMGB1-205ENST00000399494 TDO2P48775 406 aa33.93■■■■□ 3.02
HMGB1-205ENST00000399494 CPXCR1Q8N123 301 aa33.93■■■■□ 3.02
HMGB1-205ENST00000399494 ZNF287Q9HBT7 754 aa33.93■■■■□ 3.02
HMGB1-205ENST00000399494 MTMR4Q9NYA4 1195 aa33.93■■■■□ 3.02
HMGB1-205ENST00000399494 FAM184BQ9ULE4 1060 aa33.93■■■■□ 3.02
HMGB1-205ENST00000399494 SYNGAP1Q96PV0 1343 aa33.93■■■■□ 3.02
HMGB1-205ENST00000399494 APPP05067 770 aa33.92■■■■□ 3.02
HMGB1-205ENST00000399494 IFNL3Q8IZI9 196 aa33.92■■■■□ 3.02
HMGB1-205ENST00000399494 CEP95Q96GE4 821 aa33.92■■■■□ 3.02
HMGB1-205ENST00000399494 LNPKQ9C0E8 428 aa33.92■■■■□ 3.02
HMGB1-205ENST00000399494 KIAA0355O15063 1070 aa33.91■■■■□ 3.02
HMGB1-205ENST00000399494 SLC4A3P48751 1232 aa33.91■■■■□ 3.02
HMGB1-205ENST00000399494 DHX30Q7L2E3 1194 aaKnown RBP eCLIP33.91■■■■□ 3.02
HMGB1-205ENST00000399494 KLHDC9Q8NEP7 349 aa33.91■■■■□ 3.02
HMGB1-205ENST00000399494 KIFC2Q96AC6 838 aa33.91■■■■□ 3.02
HMGB1-205ENST00000399494 SEMA6BQ9H3T3 888 aa33.91■■■■□ 3.02
HMGB1-205ENST00000399494 SLC38A10Q9HBR0 1119 aa33.91■■■■□ 3.02
HMGB1-205ENST00000399494 RAVER2Q9HCJ3 691 aaKnown RBP33.91■■■■□ 3.02
HMGB1-205ENST00000399494 FEM1BQ9UK73 627 aa33.91■■■■□ 3.02
HMGB1-205ENST00000399494 ACLYP53396 1101 aa33.9■■■■□ 3.02
HMGB1-205ENST00000399494 SMAD3P84022 425 aaKnown RBP33.9■■■■□ 3.02
HMGB1-205ENST00000399494 CCSAPQ6IQ19 270 aaPredicted RBP33.9■■■■□ 3.02
HMGB1-205ENST00000399494 ZNF467Q7Z7K2 595 aaPredicted RBP33.9■■■■□ 3.02
HMGB1-205ENST00000399494 SYNPO2Q9UMS6 1093 aa33.9■■■■□ 3.02
HMGB1-205ENST00000399494 CTDP1Q9Y5B0 961 aaPredicted RBP33.9■■■■□ 3.02
HMGB1-205ENST00000399494 SYNRGQ9UMZ2 1314 aa33.89■■■■□ 3.02
HMGB1-205ENST00000399494 PQBP1O60828 265 aaKnown RBP33.88■■■■□ 3.01
HMGB1-205ENST00000399494 TTLL1O95922 423 aa33.88■■■■□ 3.01
HMGB1-205ENST00000399494 EPHB4P54760 987 aa33.88■■■■□ 3.01
HMGB1-205ENST00000399494 KCNA10Q16322 511 aa33.88■■■■□ 3.01
HMGB1-205ENST00000399494 ANKRD33Q7Z3H0 272 aa33.88■■■■□ 3.01
HMGB1-205ENST00000399494 CHD1LQ86WJ1 897 aa33.88■■■■□ 3.01
HMGB1-205ENST00000399494 GMCL1P1Q8NEA9 526 aa33.88■■■■□ 3.01
HMGB1-205ENST00000399494 PI4K2BQ8TCG2 481 aa33.88■■■■□ 3.01
HMGB1-205ENST00000399494 TOX2Q96NM4 488 aa33.88■■■■□ 3.01
HMGB1-205ENST00000399494 SEC62Q99442 399 aaKnown RBP33.88■■■■□ 3.01
HMGB1-205ENST00000399494 CDX2Q99626 313 aaPredicted RBP33.88■■■■□ 3.01
HMGB1-205ENST00000399494 SALL3Q9BXA9 1300 aa33.87■■■■□ 3.01
HMGB1-205ENST00000399494 UNC80Q8N2C7 3258 aa33.87■■■■□ 3.01
HMGB1-205ENST00000399494 RAG1P15918 1043 aa33.87■■■■□ 3.01
HMGB1-205ENST00000399494 NUCB1Q02818 461 aa33.87■■■■□ 3.01
HMGB1-205ENST00000399494 FAAP100Q0VG06 881 aa33.87■■■■□ 3.01
HMGB1-205ENST00000399494 LRRFIP1Q32MZ4 808 aaKnown RBP33.87■■■■□ 3.01
HMGB1-205ENST00000399494 NEDD1Q8NHV4 660 aa33.87■■■■□ 3.01
HMGB1-205ENST00000399494 NUP133Q8WUM0 1156 aa33.87■■■■□ 3.01
HMGB1-205ENST00000399494 TMEM39AQ9NV64 488 aa33.87■■■■□ 3.01
HMGB1-205ENST00000399494 ZHX1Q9UKY1 873 aaPredicted RBP33.87■■■■□ 3.01
HMGB1-205ENST00000399494 MYH4Q9Y623 1939 aa33.87■■■■□ 3.01
HMGB1-205ENST00000399494 MOXD2PA6NHM9 499 aa33.86■■■■□ 3.01
HMGB1-205ENST00000399494 DUSP11O75319 330 aaKnown RBP33.86■■■■□ 3.01
HMGB1-205ENST00000399494 ACVR2BQ13705 512 aa33.86■■■■□ 3.01
HMGB1-205ENST00000399494 ANKRD35Q8N283 1001 aa33.86■■■■□ 3.01
HMGB1-205ENST00000399494 CHST13Q8NET6 341 aa33.86■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms