RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 NDUFB10O96000 172 aa16.45■□□□□ 0.22
SKA1-202ENST00000398452 GOLGA8HP0CJ92 632 aa16.45■□□□□ 0.22
SKA1-202ENST00000398452 SMARCA1P28370 1054 aa16.45■□□□□ 0.22
SKA1-202ENST00000398452 ZNF543Q08ER8 600 aa16.45■□□□□ 0.22
SKA1-202ENST00000398452 ST3GAL1Q11201 340 aa16.45■□□□□ 0.22
SKA1-202ENST00000398452 SPP2Q13103 211 aa16.45■□□□□ 0.22
SKA1-202ENST00000398452 ACER1Q8TDN7 264 aa16.45■□□□□ 0.22
SKA1-202ENST00000398452 PHKBQ93100 1093 aa16.45■□□□□ 0.22
SKA1-202ENST00000398452 RRP36Q96EU6 259 aaKnown RBP16.45■□□□□ 0.22
SKA1-202ENST00000398452 WDR18Q9BV38 432 aa16.45■□□□□ 0.22
SKA1-202ENST00000398452 MAD2L2Q9UI95 211 aa16.45■□□□□ 0.22
SKA1-202ENST00000398452 PRPF3O43395 683 aaKnown RBP16.44■□□□□ 0.22
SKA1-202ENST00000398452 PLEKHA8P1O95397 391 aa16.44■□□□□ 0.22
SKA1-202ENST00000398452 SNHG28P0DPA3 235 aa16.44■□□□□ 0.22
SKA1-202ENST00000398452 ZNF157P51786 506 aaPredicted RBP16.44■□□□□ 0.22
SKA1-202ENST00000398452 RGMBQ6NW40 437 aa16.44■□□□□ 0.22
SKA1-202ENST00000398452 KCTD1Q719H9 257 aa16.44■□□□□ 0.22
SKA1-202ENST00000398452 CCDC84Q86UT8 332 aaPredicted RBP16.44■□□□□ 0.22
SKA1-202ENST00000398452 ERO1BQ86YB8 467 aa16.44■□□□□ 0.22
SKA1-202ENST00000398452 SLC10A4Q96EP9 437 aa16.44■□□□□ 0.22
SKA1-202ENST00000398452 KIAA1683Q9H0B3 1180 aa16.44■□□□□ 0.22
SKA1-202ENST00000398452 ELP3Q9H9T3 547 aa16.44■□□□□ 0.22
SKA1-202ENST00000398452 FAM217BQ9NTX9 383 aaPredicted RBP16.44■□□□□ 0.22
SKA1-202ENST00000398452 GREB1LQ9C091 1923 aaPredicted RBP16.44■□□□□ 0.22
SKA1-202ENST00000398452 A0A1W2PRG0 241 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 VPS37CA5D8V6 355 aaPredicted RBP16.43■□□□□ 0.22
SKA1-202ENST00000398452 TRIM75PA6NK02 468 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 PPFIA3O75145 1194 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 CTDNEP1O95476 244 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 BACE1P56817 501 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 PPATQ06203 517 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 MTMR2Q13614 643 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 NTRK3Q16288 839 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.43■□□□□ 0.22
SKA1-202ENST00000398452 SIAH1Q8IUQ4 282 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 SPICE1Q8N0Z3 855 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 CMTR1Q8N1G2 835 aaKnown RBP16.43■□□□□ 0.22
SKA1-202ENST00000398452 STAG2Q8N3U4 1231 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 CHURC1Q8WUH1 139 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 OTUD5Q96G74 571 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 HHIPL1Q96JK4 782 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 C8orf76Q96K31 380 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 ALG1Q9BT22 464 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 SPZ1Q9BXG8 430 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 VAT1LQ9HCJ6 419 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.43■□□□□ 0.22
SKA1-202ENST00000398452 METRNQ9UJH8 293 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 CTDP1Q9Y5B0 961 aaPredicted RBP16.43■□□□□ 0.22
SKA1-202ENST00000398452 SNCAIPQ9Y6H5 919 aa16.43■□□□□ 0.22
SKA1-202ENST00000398452 V9GY48 417 aaPredicted RBP16.43■□□□□ 0.22
SKA1-202ENST00000398452 CASP8AP2Q9UKL3 1982 aa16.42■□□□□ 0.22
SKA1-202ENST00000398452 DOCK1Q14185 1865 aa16.42■□□□□ 0.22
SKA1-202ENST00000398452 TMEM232C9JQI7 657 aa16.42■□□□□ 0.22
SKA1-202ENST00000398452 UBE2Q2LH0YL09 131 aa16.42■□□□□ 0.22
SKA1-202ENST00000398452 WDR46O15213 610 aaKnown RBP16.42■□□□□ 0.22
SKA1-202ENST00000398452 STX6O43752 255 aa16.42■□□□□ 0.22
SKA1-202ENST00000398452 STAT2P52630 851 aa16.42■□□□□ 0.22
SKA1-202ENST00000398452 GNL2Q13823 731 aaKnown RBP16.42■□□□□ 0.22
SKA1-202ENST00000398452 SAFBQ15424 915 aaKnown RBP eCLIP16.42■□□□□ 0.22
SKA1-202ENST00000398452 FAM160B2Q86V87 743 aa16.42■□□□□ 0.22
SKA1-202ENST00000398452 SRBD1Q8N5C6 995 aaKnown RBP16.42■□□□□ 0.22
SKA1-202ENST00000398452 PIBF1Q8WXW3 757 aa16.42■□□□□ 0.22
SKA1-202ENST00000398452 MYH4Q9Y623 1939 aa16.42■□□□□ 0.22
SKA1-202ENST00000398452 KIF23Q02241 960 aaPredicted RBP16.41■□□□□ 0.22
SKA1-202ENST00000398452 TRAF1Q13077 416 aa16.41■□□□□ 0.22
SKA1-202ENST00000398452 NOGQ13253 232 aa16.41■□□□□ 0.22
SKA1-202ENST00000398452 FAM83BQ5T0W9 1011 aa16.41■□□□□ 0.22
SKA1-202ENST00000398452 MOB2Q70IA6 237 aa16.41■□□□□ 0.22
SKA1-202ENST00000398452 HOMER1Q86YM7 354 aa16.41■□□□□ 0.22
SKA1-202ENST00000398452 CCDC12Q8WUD4 166 aaPredicted RBP16.41■□□□□ 0.22
SKA1-202ENST00000398452 UBA5Q9GZZ9 404 aa16.41■□□□□ 0.22
SKA1-202ENST00000398452 BRMS1Q9HCU9 246 aa16.41■□□□□ 0.22
SKA1-202ENST00000398452 FEM1BQ9UK73 627 aa16.41■□□□□ 0.22
SKA1-202ENST00000398452 CNTNAP5Q8WYK1 1306 aa16.41■□□□□ 0.22
SKA1-202ENST00000398452 ATAD5Q96QE3 1844 aa16.4■□□□□ 0.22
SKA1-202ENST00000398452 SPDYE5A6NIY4 337 aa16.4■□□□□ 0.22
SKA1-202ENST00000398452 SYT1P21579 422 aa16.4■□□□□ 0.22
SKA1-202ENST00000398452 TIE1P35590 1138 aa16.4■□□□□ 0.22
SKA1-202ENST00000398452 FOSBP53539 338 aa16.4■□□□□ 0.22
SKA1-202ENST00000398452 ATN1P54259 1190 aaPredicted RBP16.4■□□□□ 0.22
SKA1-202ENST00000398452 CCDC148Q8NFR7 591 aa16.4■□□□□ 0.22
SKA1-202ENST00000398452 ABHD8Q96I13 439 aa16.4■□□□□ 0.22
SKA1-202ENST00000398452 TANGO6Q9C0B7 1094 aa16.4■□□□□ 0.22
SKA1-202ENST00000398452 ATP6V1DQ9Y5K8 247 aa16.4■□□□□ 0.22
SKA1-202ENST00000398452 PAPPA2Q9BXP8 1791 aa16.39■□□□□ 0.21
SKA1-202ENST00000398452 THSD7BQ9C0I4 1608 aa16.39■□□□□ 0.21
SKA1-202ENST00000398452 FAM155AB1AL88 458 aaPredicted RBP16.39■□□□□ 0.21
SKA1-202ENST00000398452 hCG_1984214I3L0E3 225 aa16.39■□□□□ 0.21
SKA1-202ENST00000398452 CXCL11O14625 94 aa16.39■□□□□ 0.21
SKA1-202ENST00000398452 SCG2P13521 617 aa16.39■□□□□ 0.21
SKA1-202ENST00000398452 HMGCS2P54868 508 aa16.39■□□□□ 0.21
SKA1-202ENST00000398452 PPIL2Q13356 520 aa16.39■□□□□ 0.21
SKA1-202ENST00000398452 LDLRAD1Q5T700 205 aa16.39■□□□□ 0.21
SKA1-202ENST00000398452 SYDE2Q5VT97 1194 aa16.39■□□□□ 0.21
SKA1-202ENST00000398452 MCTP1Q6DN14 999 aa16.39■□□□□ 0.21
SKA1-202ENST00000398452 NBPF11Q86T75 865 aa16.39■□□□□ 0.21
SKA1-202ENST00000398452 ZNF713Q8N859 430 aaPredicted RBP16.39■□□□□ 0.21
SKA1-202ENST00000398452 CCDC102AQ96A19 550 aa16.39■□□□□ 0.21
SKA1-202ENST00000398452 OPTNQ96CV9 577 aa16.39■□□□□ 0.21
SKA1-202ENST00000398452 CLMNQ96JQ2 1002 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms