RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 MAMDC4Q6UXC1 1216 aa19.38■□□□□ 0.69
CUX2-202ENST00000397643 MSL3Q8N5Y2 521 aaKnown RBP19.38■□□□□ 0.69
CUX2-202ENST00000397643 PANK1Q8TE04 598 aa19.38■□□□□ 0.69
CUX2-202ENST00000397643 SYNGAP1Q96PV0 1343 aa19.38■□□□□ 0.69
CUX2-202ENST00000397643 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.38■□□□□ 0.69
CUX2-202ENST00000397643 ZNF576Q9H609 170 aa19.38■□□□□ 0.69
CUX2-202ENST00000397643 PAG1Q9NWQ8 432 aa19.38■□□□□ 0.69
CUX2-202ENST00000397643 MYH7P12883 1935 aa19.37■□□□□ 0.69
CUX2-202ENST00000397643 DCDC2CA8MYV0 355 aa19.37■□□□□ 0.69
CUX2-202ENST00000397643 APBB1O00213 710 aa19.37■□□□□ 0.69
CUX2-202ENST00000397643 ADCY6O43306 1168 aa19.37■□□□□ 0.69
CUX2-202ENST00000397643 TIMP1P01033 207 aa19.37■□□□□ 0.69
CUX2-202ENST00000397643 IFIT2P09913 472 aaKnown RBP19.37■□□□□ 0.69
CUX2-202ENST00000397643 CST5P28325 142 aaPredicted RBP19.37■□□□□ 0.69
CUX2-202ENST00000397643 KCNA10Q16322 511 aa19.37■□□□□ 0.69
CUX2-202ENST00000397643 TJAP1Q5JTD0 557 aa19.37■□□□□ 0.69
CUX2-202ENST00000397643 RASIP1Q5U651 963 aa19.37■□□□□ 0.69
CUX2-202ENST00000397643 C16orf59Q7L2K0 433 aa19.37■□□□□ 0.69
CUX2-202ENST00000397643 SIRT2Q8IXJ6 389 aa19.37■□□□□ 0.69
CUX2-202ENST00000397643 TIFAQ96CG3 184 aa19.37■□□□□ 0.69
CUX2-202ENST00000397643 BOLA2Q9H3K6 86 aa19.37■□□□□ 0.69
CUX2-202ENST00000397643 GOPCQ9HD26 462 aa19.37■□□□□ 0.69
CUX2-202ENST00000397643 RIPK3Q9Y572 518 aa19.37■□□□□ 0.69
CUX2-202ENST00000397643 CDK7P50613 346 aa19.36■□□□□ 0.69
CUX2-202ENST00000397643 CTR9Q6PD62 1173 aa19.36■□□□□ 0.69
CUX2-202ENST00000397643 NUP133Q8WUM0 1156 aa19.36■□□□□ 0.69
CUX2-202ENST00000397643 FGD4Q96M96 766 aa19.36■□□□□ 0.69
CUX2-202ENST00000397643 NUP88Q99567 741 aaPredicted RBP19.36■□□□□ 0.69
CUX2-202ENST00000397643 TEX13BQ9BXU2 312 aa19.36■□□□□ 0.69
CUX2-202ENST00000397643 FAM184BQ9ULE4 1060 aa19.36■□□□□ 0.69
CUX2-202ENST00000397643 MCM3APO60318 1980 aa19.35■□□□□ 0.69
CUX2-202ENST00000397643 DUSP11O75319 330 aaKnown RBP19.35■□□□□ 0.69
CUX2-202ENST00000397643 ATP5JP18859 108 aa19.35■□□□□ 0.69
CUX2-202ENST00000397643 PBX2P40425 430 aa19.35■□□□□ 0.69
CUX2-202ENST00000397643 UBE3CQ15386 1083 aa19.35■□□□□ 0.69
CUX2-202ENST00000397643 TMEM240Q5SV17 173 aa19.35■□□□□ 0.69
CUX2-202ENST00000397643 SNRNP48Q6IEG0 339 aaKnown RBP19.35■□□□□ 0.69
CUX2-202ENST00000397643 MFSD5Q6N075 450 aa19.35■□□□□ 0.69
CUX2-202ENST00000397643 HAUS7Q99871 368 aa19.35■□□□□ 0.69
CUX2-202ENST00000397643 SLF1Q9BQI6 1058 aa19.35■□□□□ 0.69
CUX2-202ENST00000397643 RCAN3Q9UKA8 241 aa19.35■□□□□ 0.69
CUX2-202ENST00000397643 ZHX1Q9UKY1 873 aaPredicted RBP19.35■□□□□ 0.69
CUX2-202ENST00000397643 NCOR1O75376 2440 aa19.34■□□□□ 0.69
CUX2-202ENST00000397643 ELP1O95163 1332 aa19.34■□□□□ 0.69
CUX2-202ENST00000397643 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.34■□□□□ 0.69
CUX2-202ENST00000397643 ZNF467Q7Z7K2 595 aaPredicted RBP19.34■□□□□ 0.69
CUX2-202ENST00000397643 AMOTL1Q8IY63 956 aa19.34■□□□□ 0.69
CUX2-202ENST00000397643 PBX4Q9BYU1 374 aa19.34■□□□□ 0.69
CUX2-202ENST00000397643 PUS7LQ9H0K6 701 aaKnown RBP19.34■□□□□ 0.69
CUX2-202ENST00000397643 SLC4A4Q9Y6R1 1079 aa19.34■□□□□ 0.69
CUX2-202ENST00000397643 MYO9BQ13459 2157 aa19.34■□□□□ 0.69
CUX2-202ENST00000397643 GRXCR1A8MXD5 290 aa19.33■□□□□ 0.68
CUX2-202ENST00000397643 ATP2A1O14983 1001 aa19.33■□□□□ 0.68
CUX2-202ENST00000397643 RAD21O60216 631 aa19.33■□□□□ 0.68
CUX2-202ENST00000397643 NDUFB10O96000 172 aa19.33■□□□□ 0.68
CUX2-202ENST00000397643 GLT1D1Q96MS3 346 aa19.33■□□□□ 0.68
CUX2-202ENST00000397643 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.33■□□□□ 0.68
CUX2-202ENST00000397643 UPF3AQ9H1J1 476 aaKnown RBP19.33■□□□□ 0.68
CUX2-202ENST00000397643 CHD7Q9P2D1 2997 aa19.33■□□□□ 0.68
CUX2-202ENST00000397643 MROH7Q68CQ1 1323 aa19.32■□□□□ 0.68
CUX2-202ENST00000397643 CTAGE5O15320 804 aa19.32■□□□□ 0.68
CUX2-202ENST00000397643 CENPBP07199 599 aaPredicted RBP19.32■□□□□ 0.68
CUX2-202ENST00000397643 ASGR1P07306 291 aa19.32■□□□□ 0.68
CUX2-202ENST00000397643 CSF2RAP15509 400 aa19.32■□□□□ 0.68
CUX2-202ENST00000397643 RASA1P20936 1047 aa19.32■□□□□ 0.68
CUX2-202ENST00000397643 PPIGQ13427 754 aaKnown RBP eCLIP19.32■□□□□ 0.68
CUX2-202ENST00000397643 ACVR2BQ13705 512 aa19.32■□□□□ 0.68
CUX2-202ENST00000397643 FAM126BQ8IXS8 530 aa19.32■□□□□ 0.68
CUX2-202ENST00000397643 DDX11Q96FC9 970 aa19.32■□□□□ 0.68
CUX2-202ENST00000397643 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.32■□□□□ 0.68
CUX2-202ENST00000397643 ARPP21Q9UBL0 812 aaPredicted RBP19.32■□□□□ 0.68
CUX2-202ENST00000397643 F5H6K3 240 aa19.31■□□□□ 0.68
CUX2-202ENST00000397643 TNFRSF10AO00220 468 aa19.31■□□□□ 0.68
CUX2-202ENST00000397643 C6orf222P0C671 652 aaPredicted RBP19.31■□□□□ 0.68
CUX2-202ENST00000397643 GJA9P57773 515 aa19.31■□□□□ 0.68
CUX2-202ENST00000397643 KLRC3Q07444 240 aa19.31■□□□□ 0.68
CUX2-202ENST00000397643 RPAP2Q8IXW5 612 aaPredicted RBP19.31■□□□□ 0.68
CUX2-202ENST00000397643 DDRGK1Q96HY6 314 aa19.31■□□□□ 0.68
CUX2-202ENST00000397643 KATNBL1Q9H079 304 aa19.31■□□□□ 0.68
CUX2-202ENST00000397643 BCL11AQ9H165 835 aa19.31■□□□□ 0.68
CUX2-202ENST00000397643 NYAP2Q9P242 653 aa19.31■□□□□ 0.68
CUX2-202ENST00000397643 IGKV6D-41A0A0C4DH26 115 aa19.3■□□□□ 0.68
CUX2-202ENST00000397643 A0A0U1RQG5 324 aaPredicted RBP19.3■□□□□ 0.68
CUX2-202ENST00000397643 ARVCFO00192 962 aa19.3■□□□□ 0.68
CUX2-202ENST00000397643 RAB11FIP3O75154 756 aa19.3■□□□□ 0.68
CUX2-202ENST00000397643 NKX3-2P78367 333 aa19.3■□□□□ 0.68
CUX2-202ENST00000397643 CCDC144BQ3MJ40 725 aa19.3■□□□□ 0.68
CUX2-202ENST00000397643 SBK1Q52WX2 424 aa19.3■□□□□ 0.68
CUX2-202ENST00000397643 AKNAD1Q5T1N1 836 aa19.3■□□□□ 0.68
CUX2-202ENST00000397643 PRPF38AQ8NAV1 312 aaKnown RBP19.3■□□□□ 0.68
CUX2-202ENST00000397643 PCSK9Q8NBP7 692 aaKnown RBP19.3■□□□□ 0.68
CUX2-202ENST00000397643 PRDM12Q9H4Q4 367 aa19.3■□□□□ 0.68
CUX2-202ENST00000397643 SLC38A10Q9HBR0 1119 aa19.3■□□□□ 0.68
CUX2-202ENST00000397643 BDP1A6H8Y1 2624 aa19.29■□□□□ 0.68
CUX2-202ENST00000397643 CD4P01730 458 aa19.29■□□□□ 0.68
CUX2-202ENST00000397643 ACRP10323 421 aa19.29■□□□□ 0.68
CUX2-202ENST00000397643 ADGRE1Q14246 886 aa19.29■□□□□ 0.68
CUX2-202ENST00000397643 PSRC1Q6PGN9 363 aaPredicted RBP19.29■□□□□ 0.68
CUX2-202ENST00000397643 ZNF365Q70YC5 407 aa19.29■□□□□ 0.68
CUX2-202ENST00000397643 ARMCX2Q7L311 632 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms