RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 MAPK8IP1Q9UQF2 711 aa28.55■■■□□ 2.16
C9orf40-201ENST00000376854 GDAQ9Y2T3 454 aa28.55■■■□□ 2.16
C9orf40-201ENST00000376854 SASH3O75995 380 aa28.54■■■□□ 2.16
C9orf40-201ENST00000376854 USP17L8P0C7I0 530 aa28.54■■■□□ 2.16
C9orf40-201ENST00000376854 ERVK-24P63145 666 aa28.54■■■□□ 2.16
C9orf40-201ENST00000376854 TFAP4Q01664 338 aa28.54■■■□□ 2.16
C9orf40-201ENST00000376854 VPS72Q15906 364 aa28.54■■■□□ 2.16
C9orf40-201ENST00000376854 MYH13Q9UKX3 1938 aa28.54■■■□□ 2.16
C9orf40-201ENST00000376854 ZPR1O75312 459 aa28.54■■■□□ 2.16
C9orf40-201ENST00000376854 TRIM14Q14142 442 aa28.54■■■□□ 2.16
C9orf40-201ENST00000376854 CDC23Q9UJX2 597 aa28.54■■■□□ 2.16
C9orf40-201ENST00000376854 LAMB1P07942 1786 aa28.54■■■□□ 2.16
C9orf40-201ENST00000376854 PRCPP42785 496 aa28.53■■■□□ 2.16
C9orf40-201ENST00000376854 DZIP1Q86YF9 867 aaKnown RBP28.53■■■□□ 2.16
C9orf40-201ENST00000376854 PNMA1Q8ND90 353 aa28.53■■■□□ 2.16
C9orf40-201ENST00000376854 RASGRP4Q8TDF6 673 aa28.53■■■□□ 2.16
C9orf40-201ENST00000376854 RNF225M0QZC1 329 aaPredicted RBP28.53■■■□□ 2.16
C9orf40-201ENST00000376854 CYP26C1Q6V0L0 522 aa28.53■■■□□ 2.16
C9orf40-201ENST00000376854 DGKHQ86XP1 1220 aa28.53■■■□□ 2.16
C9orf40-201ENST00000376854 IL17RBQ9NRM6 502 aa28.53■■■□□ 2.16
C9orf40-201ENST00000376854 RC3H1Q5TC82 1133 aaKnown RBP28.52■■■□□ 2.16
C9orf40-201ENST00000376854 JAKMIP3Q5VZ66 844 aa28.52■■■□□ 2.16
C9orf40-201ENST00000376854 WWC2Q6AWC2 1192 aa28.52■■■□□ 2.16
C9orf40-201ENST00000376854 STAG2Q8N3U4 1231 aa28.52■■■□□ 2.16
C9orf40-201ENST00000376854 CEP112Q8N8E3 955 aa28.52■■■□□ 2.16
C9orf40-201ENST00000376854 DISC1Q9NRI5 854 aa28.52■■■□□ 2.16
C9orf40-201ENST00000376854 CTAGE9A4FU28 777 aa28.52■■■□□ 2.16
C9orf40-201ENST00000376854 TM4SF1P30408 202 aa28.52■■■□□ 2.16
C9orf40-201ENST00000376854 KIF4BQ2VIQ3 1234 aa28.52■■■□□ 2.16
C9orf40-201ENST00000376854 PUF60Q9UHX1 559 aaKnown RBP28.52■■■□□ 2.16
C9orf40-201ENST00000376854 KIAA1551Q9HCM1 1747 aa28.51■■■□□ 2.15
C9orf40-201ENST00000376854 TMED8Q6PL24 325 aaPredicted RBP28.51■■■□□ 2.15
C9orf40-201ENST00000376854 SLC35F6Q8N357 371 aa28.51■■■□□ 2.15
C9orf40-201ENST00000376854 CCDC194A0A1B0GVG4 234 aa28.51■■■□□ 2.15
C9orf40-201ENST00000376854 H7C1D1 291 aa28.51■■■□□ 2.15
C9orf40-201ENST00000376854 UBXN1Q04323 297 aa28.51■■■□□ 2.15
C9orf40-201ENST00000376854 TUBB2AQ13885 445 aa28.51■■■□□ 2.15
C9orf40-201ENST00000376854 DTHD1Q6ZMT9 781 aa28.51■■■□□ 2.15
C9orf40-201ENST00000376854 ARHGEF1Q92888 912 aaKnown RBP28.51■■■□□ 2.15
C9orf40-201ENST00000376854 TUBB2BQ9BVA1 445 aa28.51■■■□□ 2.15
C9orf40-201ENST00000376854 UBXN6Q9BZV1 441 aa28.51■■■□□ 2.15
C9orf40-201ENST00000376854 CCNL1Q9UK58 526 aaPredicted RBP28.51■■■□□ 2.15
C9orf40-201ENST00000376854 C12orf60Q5U649 245 aa28.5■■■□□ 2.15
C9orf40-201ENST00000376854 TYW1BQ6NUM6 668 aa28.5■■■□□ 2.15
C9orf40-201ENST00000376854 TPTE2Q6XPS3 522 aa28.5■■■□□ 2.15
C9orf40-201ENST00000376854 COL24A1Q17RW2 1714 aa28.49■■■□□ 2.15
C9orf40-201ENST00000376854 KRT9P35527 623 aa28.49■■■□□ 2.15
C9orf40-201ENST00000376854 SPTY2D1Q68D10 685 aaPredicted RBP28.49■■■□□ 2.15
C9orf40-201ENST00000376854 RASSF8Q8NHQ8 419 aa28.49■■■□□ 2.15
C9orf40-201ENST00000376854 DYNLL2Q96FJ2 89 aa28.49■■■□□ 2.15
C9orf40-201ENST00000376854 M0R2N6 131 aa28.49■■■□□ 2.15
C9orf40-201ENST00000376854 RGL2O15211 777 aa28.49■■■□□ 2.15
C9orf40-201ENST00000376854 POLR3GO15318 223 aaPredicted RBP28.49■■■□□ 2.15
C9orf40-201ENST00000376854 USP5P45974 858 aa28.49■■■□□ 2.15
C9orf40-201ENST00000376854 GRM4Q14833 912 aa28.49■■■□□ 2.15
C9orf40-201ENST00000376854 ADSSL1Q8N142 457 aa28.49■■■□□ 2.15
C9orf40-201ENST00000376854 BTAF1O14981 1849 aa28.49■■■□□ 2.15
C9orf40-201ENST00000376854 ABL1P00519 1130 aa28.48■■■□□ 2.15
C9orf40-201ENST00000376854 PARP1P09874 1014 aaKnown RBP28.48■■■□□ 2.15
C9orf40-201ENST00000376854 NAALADL2Q58DX5 795 aa28.48■■■□□ 2.15
C9orf40-201ENST00000376854 ANKS1AQ92625 1134 aa28.48■■■□□ 2.15
C9orf40-201ENST00000376854 MAD2L2Q9UI95 211 aa28.48■■■□□ 2.15
C9orf40-201ENST00000376854 RTCBQ9Y3I0 505 aaKnown RBP28.48■■■□□ 2.15
C9orf40-201ENST00000376854 CCDC151A5D8V7 595 aa28.48■■■□□ 2.15
C9orf40-201ENST00000376854 TRIM49BA6NDI0 452 aa28.48■■■□□ 2.15
C9orf40-201ENST00000376854 PP2D1A8MPX8 630 aa28.48■■■□□ 2.15
C9orf40-201ENST00000376854 GNAQP50148 359 aa28.48■■■□□ 2.15
C9orf40-201ENST00000376854 IRF2BP1Q8IU81 584 aa28.48■■■□□ 2.15
C9orf40-201ENST00000376854 FUT8Q9BYC5 575 aa28.48■■■□□ 2.15
C9orf40-201ENST00000376854 MKRN1Q9UHC7 482 aaKnown RBP28.48■■■□□ 2.15
C9orf40-201ENST00000376854 PCDHA6Q9UN73 950 aa28.48■■■□□ 2.15
C9orf40-201ENST00000376854 PCDHA8Q9Y5H6 950 aa28.48■■■□□ 2.15
C9orf40-201ENST00000376854 BRD3Q15059 726 aa28.47■■■□□ 2.15
C9orf40-201ENST00000376854 TMEM60Q9H2L4 133 aa28.47■■■□□ 2.15
C9orf40-201ENST00000376854 MKNK2Q9HBH9 465 aa28.47■■■□□ 2.15
C9orf40-201ENST00000376854 ERICH4A6NGS2 130 aa28.47■■■□□ 2.15
C9orf40-201ENST00000376854 ARHGAP25P42331 645 aa28.47■■■□□ 2.15
C9orf40-201ENST00000376854 SMC1AQ14683 1233 aaKnown RBP28.47■■■□□ 2.15
C9orf40-201ENST00000376854 NAPGQ99747 312 aaPredicted RBP28.47■■■□□ 2.15
C9orf40-201ENST00000376854 SLF1Q9BQI6 1058 aa28.47■■■□□ 2.15
C9orf40-201ENST00000376854 IRS2Q9Y4H2 1338 aa28.46■■■□□ 2.15
C9orf40-201ENST00000376854 TOM1O60784 492 aa28.46■■■□□ 2.15
C9orf40-201ENST00000376854 CYP2C19P33261 490 aa28.46■■■□□ 2.15
C9orf40-201ENST00000376854 LONRF2Q1L5Z9 754 aa28.46■■■□□ 2.15
C9orf40-201ENST00000376854 INF2Q27J81 1249 aa28.46■■■□□ 2.15
C9orf40-201ENST00000376854 TAF3Q5VWG9 929 aa28.46■■■□□ 2.15
C9orf40-201ENST00000376854 CCDC148Q8NFR7 591 aa28.46■■■□□ 2.15
C9orf40-201ENST00000376854 ANKZF1Q9H8Y5 726 aa28.46■■■□□ 2.15
C9orf40-201ENST00000376854 USP17L3A6NCW0 530 aa28.46■■■□□ 2.15
C9orf40-201ENST00000376854 USP17L4A6NCW7 530 aa28.46■■■□□ 2.15
C9orf40-201ENST00000376854 UBA7P41226 1012 aa28.46■■■□□ 2.15
C9orf40-201ENST00000376854 NT5C2P49902 561 aa28.46■■■□□ 2.15
C9orf40-201ENST00000376854 KCNB1Q14721 858 aa28.46■■■□□ 2.15
C9orf40-201ENST00000376854 USP17L1Q7RTZ2 530 aa28.46■■■□□ 2.15
C9orf40-201ENST00000376854 HEATR3Q7Z4Q2 680 aa28.46■■■□□ 2.15
C9orf40-201ENST00000376854 MYO1AQ9UBC5 1043 aa28.46■■■□□ 2.15
C9orf40-201ENST00000376854 MAST2Q6P0Q8 1798 aa28.45■■■□□ 2.15
C9orf40-201ENST00000376854 TNRC6CQ9HCJ0 1690 aaKnown RBP28.45■■■□□ 2.15
C9orf40-201ENST00000376854 CCDC66A2RUB6 948 aa28.45■■■□□ 2.14
C9orf40-201ENST00000376854 OAS2P29728 719 aaKnown RBP28.45■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 280.5 ms