RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ZNF365Q70YC5 407 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 ADAMTS8Q9UP79 889 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 POTEFA5A3E0 1075 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 LRRC53A6NM62 1247 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 IPO5O00410 1097 aaKnown RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 PFDN1O60925 122 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 GPC4O75487 556 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 ATP5DP30049 168 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 RNASE9P60153 205 aaKnown RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 HDGFL1Q5TGJ6 251 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 LMBR1Q8WVP7 490 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 TXLNGQ9NUQ3 528 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 TMCC3Q9ULS5 477 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 FMN1Q68DA7 1419 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 YWHAQP27348 245 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 CCT2P78371 535 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 DCAF4L1Q3SXM0 396 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 HHATQ5VTY9 493 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 FAM178BQ8IXR5 827 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 MGARPQ8TDB4 240 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 VPS16Q9H269 839 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 TRIM45Q9H8W5 580 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 TRAF3IP3Q9Y228 551 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 POLR2DO15514 142 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 PSMA3P25788 255 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 DDIT3P35638 169 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 TRPC1P48995 793 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 PSMC1P62191 440 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 RBBP4Q09028 425 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 DHX57Q6P158 1386 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 NBPF5PQ86XG9 351 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 MSL3Q8N5Y2 521 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 KBTBD3Q8NAB2 608 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 DEPDC7Q96QD5 511 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 STX18Q9P2W9 335 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 SCGNO76038 276 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 EPN2O95208 641 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 UBA1P22314 1058 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 ATP2B4P23634 1241 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 NR5A1Q13285 461 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 TMED1Q13445 227 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 PRPSAP1Q14558 356 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 ZNF174Q15697 407 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 TSNAXIP1Q2TAA8 658 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 ACCSLQ4AC99 568 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 GADL1Q6ZQY3 521 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 SPATS2Q86XZ4 545 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 GGNBP2Q9H3C7 697 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 BAZ2BQ9UIF8 2168 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 ZSCAN20P17040 1043 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 RECQLP46063 649 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 PDAP1Q13442 181 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 TRIM71Q2Q1W2 868 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 AKIRIN2Q53H80 203 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 DPY19L2Q6NUT2 758 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 TMC6Q7Z403 805 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 RSAD2Q8WXG1 361 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 RAPGEF5Q92565 580 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 TBRG4Q969Z0 631 aaKnown RBP eCLIP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 SAP30BPQ9UHR5 308 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 TELO2Q9Y4R8 837 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 A0A087X0T9 212 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 SNX2O60749 519 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 AKT1P31749 480 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 RARSP54136 660 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 CEP78Q5JTW2 689 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 FRA10AC1Q70Z53 315 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 GAS2L2Q8NHY3 880 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 KLHDC4Q8TBB5 520 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 PDCD6IPQ8WUM4 868 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 MED4Q9NPJ6 270 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 SCUBE2Q9NQ36 999 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 DYRK4Q9NR20 520 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 VPS8Q8N3P4 1428 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 CARMIL1Q5VZK9 1371 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 ANKRD30AQ9BXX3 1397 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 SYCE1LA8MT33 242 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 TRAF5O00463 557 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 RGS5O15539 181 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 CCDC142Q17RM4 750 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 LIN9Q5TKA1 542 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 TRIM69Q86WT6 500 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 RNF10Q8N5U6 811 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 NCLNQ969V3 563 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 PRPF18Q99633 342 aaKnown RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 SNTNA6NMZ2 147 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 VGLL3A8MV65 326 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 H0Y626 953 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 N4BP3O15049 544 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 VCAM1P19320 739 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 SH3BGRP55822 239 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-202ENST00000375405 CREB3L3Q68CJ9 461 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 ARMC9Q7Z3E5 817 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 RFWD2Q8NHY2 731 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 ARHGAP45Q92619 1136 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 ZCWPW1Q9H0M4 648 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 RBSNQ9H1K0 784 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 IFT122Q9HBG6 1241 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 STMN3Q9NZ72 180 aa5.07□□□□□ -1.6
SCN1A-202ENST00000375405 TRPC6Q9Y210 931 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms