RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 TAB2Q9NYJ8 693 aa12.51□□□□□ -0.41
CCDC40-203ENST00000374877 VPS54Q9P1Q0 977 aa12.51□□□□□ -0.41
CCDC40-203ENST00000374877 MYO6Q9UM54 1294 aa12.51□□□□□ -0.41
CCDC40-203ENST00000374877 GUCA1BQ9UMX6 200 aa12.51□□□□□ -0.41
CCDC40-203ENST00000374877 ECM29Q5VYK3 1845 aa12.51□□□□□ -0.41
CCDC40-203ENST00000374877 CCDC196A0A1B0GTZ2 297 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 LRRIQ3A6PVS8 624 aaPredicted RBP12.5□□□□□ -0.41
CCDC40-203ENST00000374877 PRKAB2O43741 272 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 SKIDA1Q1XH10 827 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 GOLGA6L1Q8N7Z2 621 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 CELF1Q92879 486 aaKnown RBP12.5□□□□□ -0.41
CCDC40-203ENST00000374877 CCDC51Q96ER9 411 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 ANKRD2Q9GZV1 360 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 BLZF1Q9H2G9 400 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 FAM204AQ9H8W3 233 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 ABHD10Q9NUJ1 306 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 PPP1R3GB7ZBB8 358 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 UQCRFS1P1P0C7P4 283 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 HOXA10P31260 410 aaPredicted RBP12.5□□□□□ -0.41
CCDC40-203ENST00000374877 KRT31Q15323 416 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 PLEKHA4Q9H4M7 779 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 AATFQ9NY61 560 aaKnown RBP eCLIP12.5□□□□□ -0.41
CCDC40-203ENST00000374877 COL4A1P02462 1669 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 TCRBV5S4A2TA0A5A2 114 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 ANKRD65E5RJM6 399 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 RNF225M0QZC1 329 aaPredicted RBP12.5□□□□□ -0.41
CCDC40-203ENST00000374877 KRT9P35527 623 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 DPYDQ12882 1025 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 UBE4AQ14139 1066 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 RRAGBQ5VZM2 374 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 CYP26C1Q6V0L0 522 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 FANCBQ8NB91 859 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 CCDC148Q8NFR7 591 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 BRIP1Q9BX63 1249 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 TRIM10Q9UDY6 481 aa12.5□□□□□ -0.41
CCDC40-203ENST00000374877 PES1O00541 588 aaKnown RBP12.49□□□□□ -0.41
CCDC40-203ENST00000374877 ENC1O14682 589 aa12.49□□□□□ -0.41
CCDC40-203ENST00000374877 NOM1Q5C9Z4 860 aaKnown RBP12.49□□□□□ -0.41
CCDC40-203ENST00000374877 ZNF654Q8IZM8 581 aa12.49□□□□□ -0.41
CCDC40-203ENST00000374877 RBM17Q96I25 401 aaKnown RBP12.49□□□□□ -0.41
CCDC40-203ENST00000374877 GSDMAQ96QA5 445 aa12.49□□□□□ -0.41
CCDC40-203ENST00000374877 MINPP1Q9UNW1 487 aa12.49□□□□□ -0.41
CCDC40-203ENST00000374877 PRDM1O75626 825 aa12.49□□□□□ -0.41
CCDC40-203ENST00000374877 ARID4AP29374 1257 aaPredicted RBP12.49□□□□□ -0.41
CCDC40-203ENST00000374877 ARHGAP25P42331 645 aa12.49□□□□□ -0.41
CCDC40-203ENST00000374877 ZNF174Q15697 407 aa12.49□□□□□ -0.41
CCDC40-203ENST00000374877 ALX1Q15699 326 aa12.49□□□□□ -0.41
CCDC40-203ENST00000374877 EARS2Q5JPH6 523 aaKnown RBP12.49□□□□□ -0.41
CCDC40-203ENST00000374877 ANKRD20A12PQ8NF67 263 aa12.49□□□□□ -0.41
CCDC40-203ENST00000374877 RPGRQ92834 1020 aaKnown RBP12.49□□□□□ -0.41
CCDC40-203ENST00000374877 UBAC1Q9BSL1 405 aa12.49□□□□□ -0.41
CCDC40-203ENST00000374877 A0A1B0GUL6 1792 aa12.49□□□□□ -0.41
CCDC40-203ENST00000374877 MAP3K12Q12852 859 aa12.49□□□□□ -0.41
CCDC40-203ENST00000374877 CCDC24Q8N4L8 307 aa12.49□□□□□ -0.41
CCDC40-203ENST00000374877 GDAP1L1Q96MZ0 367 aa12.49□□□□□ -0.41
CCDC40-203ENST00000374877 CRAMP1Q96RY5 1269 aa12.49□□□□□ -0.41
CCDC40-203ENST00000374877 MAPK8IP1Q9UQF2 711 aa12.49□□□□□ -0.41
CCDC40-203ENST00000374877 SEMA3EO15041 775 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 XBP1P17861 261 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 CT47A1Q5JQC4 288 aaPredicted RBP12.48□□□□□ -0.41
CCDC40-203ENST00000374877 TMC4Q7Z404 712 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 DEFB132Q7Z7B7 95 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 CHP1Q99653 195 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 SLC4A4Q9Y6R1 1079 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 EP400Q96L91 3159 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 MYH8P13535 1937 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 GSG1L2A8MUP6 293 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 RNF40O75150 1001 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 MMP10P09238 476 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 COPB1P53618 953 aaKnown RBP12.48□□□□□ -0.41
CCDC40-203ENST00000374877 PDE4CQ08493 712 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 NACAP1Q9BZK3 213 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 MED4Q9NPJ6 270 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 HDAC6Q9UBN7 1215 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 ITIH6Q6UXX5 1313 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 SNAP23O00161 211 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 TUBBP07437 444 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 KRT2P35908 639 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 SH3RF1Q7Z6J0 888 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 MSL3Q8N5Y2 521 aaKnown RBP12.48□□□□□ -0.41
CCDC40-203ENST00000374877 MIGA1Q8NAN2 632 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 CAPZA3Q96KX2 299 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 MYO1AQ9UBC5 1043 aa12.48□□□□□ -0.41
CCDC40-203ENST00000374877 MYO5AQ9Y4I1 1855 aaKnown RBP12.48□□□□□ -0.41
CCDC40-203ENST00000374877 AKAP11Q9UKA4 1901 aa12.47□□□□□ -0.41
CCDC40-203ENST00000374877 WNT7AO00755 349 aa12.47□□□□□ -0.41
CCDC40-203ENST00000374877 UBXN1Q04323 297 aa12.47□□□□□ -0.41
CCDC40-203ENST00000374877 LRRC31Q6UY01 552 aa12.47□□□□□ -0.41
CCDC40-203ENST00000374877 SPATA5Q8NB90 893 aa12.47□□□□□ -0.41
CCDC40-203ENST00000374877 MINDY4BA8MYZ0 360 aa12.47□□□□□ -0.41
CCDC40-203ENST00000374877 BBOX1O75936 387 aa12.47□□□□□ -0.41
CCDC40-203ENST00000374877 AMPD2Q01433 879 aa12.47□□□□□ -0.41
CCDC40-203ENST00000374877 LCORLQ8N3X6 602 aa12.47□□□□□ -0.41
CCDC40-203ENST00000374877 SLC16A10Q8TF71 515 aa12.47□□□□□ -0.41
CCDC40-203ENST00000374877 TFR2Q9UP52 801 aa12.47□□□□□ -0.41
CCDC40-203ENST00000374877 EPN1Q9Y6I3 576 aaPredicted RBP12.47□□□□□ -0.41
CCDC40-203ENST00000374877 EIF3CLB5ME19 914 aaKnown RBP12.46□□□□□ -0.41
CCDC40-203ENST00000374877 KCNJ18B7U540 433 aa12.46□□□□□ -0.41
CCDC40-203ENST00000374877 SRGAP2O75044 1071 aa12.46□□□□□ -0.41
CCDC40-203ENST00000374877 ZMYND10O75800 440 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms