RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 CNGA1P29973 690 aa25.73■■□□□ 1.71
CCDC28B-201ENST00000373602 MAML3Q96JK9 1138 aa25.73■■□□□ 1.71
CCDC28B-201ENST00000373602 IL17RBQ9NRM6 502 aa25.73■■□□□ 1.71
CCDC28B-201ENST00000373602 ZNFX1Q9P2E3 1918 aaKnown RBP25.73■■□□□ 1.71
CCDC28B-201ENST00000373602 PFASO15067 1338 aa25.72■■□□□ 1.71
CCDC28B-201ENST00000373602 ZBED4O75132 1171 aa25.72■■□□□ 1.71
CCDC28B-201ENST00000373602 COL6A1P12109 1028 aa25.72■■□□□ 1.71
CCDC28B-201ENST00000373602 BMP3P12645 472 aa25.72■■□□□ 1.71
CCDC28B-201ENST00000373602 KCTD2Q14681 263 aa25.72■■□□□ 1.71
CCDC28B-201ENST00000373602 RANBP6O60518 1105 aaKnown RBP25.71■■□□□ 1.71
CCDC28B-201ENST00000373602 SNRNP48Q6IEG0 339 aaKnown RBP25.71■■□□□ 1.71
CCDC28B-201ENST00000373602 CHRDL2Q6WN34 429 aa25.71■■□□□ 1.71
CCDC28B-201ENST00000373602 KIFC2Q96AC6 838 aa25.71■■□□□ 1.71
CCDC28B-201ENST00000373602 SLC38A10Q9HBR0 1119 aa25.71■■□□□ 1.71
CCDC28B-201ENST00000373602 DIS3Q9Y2L1 958 aaKnown RBP25.71■■□□□ 1.71
CCDC28B-201ENST00000373602 FRMPD3Q5JV73 1810 aa25.71■■□□□ 1.71
CCDC28B-201ENST00000373602 NMT2O60551 498 aa25.7■■□□□ 1.7
CCDC28B-201ENST00000373602 PGK2P07205 417 aa25.7■■□□□ 1.7
CCDC28B-201ENST00000373602 NOVP48745 357 aa25.7■■□□□ 1.7
CCDC28B-201ENST00000373602 ZNF792Q3KQV3 632 aa25.7■■□□□ 1.7
CCDC28B-201ENST00000373602 GMCL1Q96IK5 515 aa25.7■■□□□ 1.7
CCDC28B-201ENST00000373602 STX8Q9UNK0 236 aa25.7■■□□□ 1.7
CCDC28B-201ENST00000373602 RIPK3Q9Y572 518 aa25.7■■□□□ 1.7
CCDC28B-201ENST00000373602 MFAP1P55081 439 aaKnown RBP25.69■■□□□ 1.7
CCDC28B-201ENST00000373602 CPXCR1Q8N123 301 aa25.69■■□□□ 1.7
CCDC28B-201ENST00000373602 CTDP1Q9Y5B0 961 aaPredicted RBP25.69■■□□□ 1.7
CCDC28B-201ENST00000373602 TMEM232C9JQI7 657 aa25.68■■□□□ 1.7
CCDC28B-201ENST00000373602 SEPT4O43236 478 aa25.68■■□□□ 1.7
CCDC28B-201ENST00000373602 FDX1P10109 184 aa25.68■■□□□ 1.7
CCDC28B-201ENST00000373602 SLC1A4P43007 532 aa25.68■■□□□ 1.7
CCDC28B-201ENST00000373602 OAZ1P54368 228 aa25.68■■□□□ 1.7
CCDC28B-201ENST00000373602 C7orf61Q8IZ16 206 aa25.68■■□□□ 1.7
CCDC28B-201ENST00000373602 PRO3102Q9H379 93 aa25.68■■□□□ 1.7
CCDC28B-201ENST00000373602 RAVER2Q9HCJ3 691 aaKnown RBP25.68■■□□□ 1.7
CCDC28B-201ENST00000373602 NRBP1Q9UHY1 535 aa25.68■■□□□ 1.7
CCDC28B-201ENST00000373602 MCCP23508 829 aa25.67■■□□□ 1.7
CCDC28B-201ENST00000373602 STAT2P52630 851 aa25.67■■□□□ 1.7
CCDC28B-201ENST00000373602 PRAMEF19Q5SWL8 479 aa25.67■■□□□ 1.7
CCDC28B-201ENST00000373602 DHX30Q7L2E3 1194 aaKnown RBP eCLIP25.67■■□□□ 1.7
CCDC28B-201ENST00000373602 FAM160B2Q86V87 743 aa25.67■■□□□ 1.7
CCDC28B-201ENST00000373602 CHURC1Q8WUH1 139 aa25.67■■□□□ 1.7
CCDC28B-201ENST00000373602 STAG1Q8WVM7 1258 aa25.67■■□□□ 1.7
CCDC28B-201ENST00000373602 TOMM22Q9NS69 142 aa25.67■■□□□ 1.7
CCDC28B-201ENST00000373602 PLA2G6O60733 806 aa25.66■■□□□ 1.7
CCDC28B-201ENST00000373602 HAND2P61296 217 aa25.66■■□□□ 1.7
CCDC28B-201ENST00000373602 TINF2Q9BSI4 451 aa25.66■■□□□ 1.7
CCDC28B-201ENST00000373602 RBM27Q9P2N5 1060 aaKnown RBP25.66■■□□□ 1.7
CCDC28B-201ENST00000373602 HIP1O00291 1037 aa25.65■■□□□ 1.7
CCDC28B-201ENST00000373602 DNM1LO00429 736 aa25.65■■□□□ 1.7
CCDC28B-201ENST00000373602 RRP12Q5JTH9 1297 aaKnown RBP25.65■■□□□ 1.7
CCDC28B-201ENST00000373602 RCSD1Q6JBY9 416 aa25.65■■□□□ 1.7
CCDC28B-201ENST00000373602 CWC27Q6UX04 472 aaKnown RBP25.65■■□□□ 1.7
CCDC28B-201ENST00000373602 DIAPH3Q9NSV4 1193 aa25.65■■□□□ 1.7
CCDC28B-201ENST00000373602 TCP11L1Q9NUJ3 509 aa25.65■■□□□ 1.7
CCDC28B-201ENST00000373602 ISY1Q9ULR0 285 aaKnown RBP25.65■■□□□ 1.7
CCDC28B-201ENST00000373602 PLXNA1Q9UIW2 1896 aa25.65■■□□□ 1.7
CCDC28B-201ENST00000373602 DNAJC25-GNG10A0A024R161 153 aa25.64■■□□□ 1.7
CCDC28B-201ENST00000373602 PCP11498 1178 aaKnown RBP25.64■■□□□ 1.7
CCDC28B-201ENST00000373602 SLC4A3P48751 1232 aa25.64■■□□□ 1.7
CCDC28B-201ENST00000373602 FXR1P51114 621 aaKnown RBP eCLIP25.64■■□□□ 1.7
CCDC28B-201ENST00000373602 IRX6P78412 446 aaPredicted RBP25.64■■□□□ 1.7
CCDC28B-201ENST00000373602 AKNAD1Q5T1N1 836 aa25.64■■□□□ 1.7
CCDC28B-201ENST00000373602 ARRDC4Q8NCT1 418 aa25.64■■□□□ 1.7
CCDC28B-201ENST00000373602 CHST13Q8NET6 341 aa25.64■■□□□ 1.7
CCDC28B-201ENST00000373602 CHMP4CQ96CF2 233 aa25.64■■□□□ 1.7
CCDC28B-201ENST00000373602 DDX11Q96FC9 970 aa25.64■■□□□ 1.7
CCDC28B-201ENST00000373602 FBXO40Q9UH90 709 aa25.64■■□□□ 1.7
CCDC28B-201ENST00000373602 PDE4AP27815 886 aa25.63■■□□□ 1.69
CCDC28B-201ENST00000373602 ANO1Q5XXA6 986 aa25.63■■□□□ 1.69
CCDC28B-201ENST00000373602 MFSD6Q6ZSS7 791 aa25.63■■□□□ 1.69
CCDC28B-201ENST00000373602 KCTD1Q719H9 257 aa25.63■■□□□ 1.69
CCDC28B-201ENST00000373602 MSL3Q8N5Y2 521 aaKnown RBP25.63■■□□□ 1.69
CCDC28B-201ENST00000373602 IKQ13123 557 aaPredicted RBP25.62■■□□□ 1.69
CCDC28B-201ENST00000373602 LRRC26Q2I0M4 334 aa25.62■■□□□ 1.69
CCDC28B-201ENST00000373602 RASGRP2Q7LDG7 609 aa25.62■■□□□ 1.69
CCDC28B-201ENST00000373602 TBC1D10CQ8IV04 446 aa25.62■■□□□ 1.69
CCDC28B-201ENST00000373602 SENP6Q9GZR1 1112 aaPredicted RBP25.62■■□□□ 1.69
CCDC28B-201ENST00000373602 ZMYND8Q9ULU4 1186 aaPredicted RBP25.62■■□□□ 1.69
CCDC28B-201ENST00000373602 ZNF536O15090 1300 aa25.62■■□□□ 1.69
CCDC28B-201ENST00000373602 TOP1P11387 765 aaKnown RBP25.61■■□□□ 1.69
CCDC28B-201ENST00000373602 GJC2Q5T442 439 aaPredicted RBP25.61■■□□□ 1.69
CCDC28B-201ENST00000373602 MAMDC4Q6UXC1 1216 aa25.61■■□□□ 1.69
CCDC28B-201ENST00000373602 DCAF4Q8WV16 495 aa25.61■■□□□ 1.69
CCDC28B-201ENST00000373602 TMEM47Q9BQJ4 181 aa25.61■■□□□ 1.69
CCDC28B-201ENST00000373602 RNF41Q9H4P4 317 aaPredicted RBP25.61■■□□□ 1.69
CCDC28B-201ENST00000373602 TRIOBPQ9H2D6 2365 aa25.61■■□□□ 1.69
CCDC28B-201ENST00000373602 ZNF865P0CJ78 1059 aaPredicted RBP25.6■■□□□ 1.69
CCDC28B-201ENST00000373602 TAL1P17542 331 aaPredicted RBP25.6■■□□□ 1.69
CCDC28B-201ENST00000373602 ZNF467Q7Z7K2 595 aaPredicted RBP25.6■■□□□ 1.69
CCDC28B-201ENST00000373602 ANKRD35Q8N283 1001 aa25.6■■□□□ 1.69
CCDC28B-201ENST00000373602 PRR12Q9ULL5 1215 aa25.6■■□□□ 1.69
CCDC28B-201ENST00000373602 MTMR7Q9Y216 660 aa25.6■■□□□ 1.69
CCDC28B-201ENST00000373602 SYNGAP1Q96PV0 1343 aa25.6■■□□□ 1.69
CCDC28B-201ENST00000373602 ZNF213O14771 459 aa25.59■■□□□ 1.69
CCDC28B-201ENST00000373602 CCDC96Q2M329 555 aa25.59■■□□□ 1.69
CCDC28B-201ENST00000373602 AGBL1Q96MI9 1066 aa25.59■■□□□ 1.69
CCDC28B-201ENST00000373602 TTC14Q96N46 770 aa25.59■■□□□ 1.69
CCDC28B-201ENST00000373602 DSCC1Q9BVC3 393 aa25.59■■□□□ 1.69
CCDC28B-201ENST00000373602 CNPY2Q9Y2B0 182 aa25.59■■□□□ 1.69
CCDC28B-201ENST00000373602 KBTBD13C9JR72 458 aa25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms