RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 SPATA31D1Q6ZQQ2 1576 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 PCK1P35558 622 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 MRRFQ96E11 262 aaKnown RBP12.63□□□□□ -0.39
PTPRF-203ENST00000372407 HYOU1Q9Y4L1 999 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 GTPBP6O43824 516 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-203ENST00000372407 CFBP00751 764 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 XRCC5P13010 732 aaKnown RBP12.63□□□□□ -0.39
PTPRF-203ENST00000372407 NDUFA8P51970 172 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 CTSWP56202 376 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 CUL4AQ13619 759 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 HHATQ5VTY9 493 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 PPP1R21Q6ZMI0 780 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 MAEAQ7L5Y9 396 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 TDRD7Q8NHU6 1098 aaKnown RBP12.63□□□□□ -0.39
PTPRF-203ENST00000372407 RTEL1Q9NZ71 1219 aa12.63□□□□□ -0.39
PTPRF-203ENST00000372407 CHAMP1Q96JM3 812 aa12.62□□□□□ -0.39
PTPRF-203ENST00000372407 ARMCX3Q9UH62 379 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-203ENST00000372407 KDM3AQ9Y4C1 1321 aa12.62□□□□□ -0.39
PTPRF-203ENST00000372407 KRT15P19012 456 aa12.62□□□□□ -0.39
PTPRF-203ENST00000372407 SNX16P57768 344 aa12.62□□□□□ -0.39
PTPRF-203ENST00000372407 LGSNQ5TDP6 509 aa12.62□□□□□ -0.39
PTPRF-203ENST00000372407 PNMA1Q8ND90 353 aa12.62□□□□□ -0.39
PTPRF-203ENST00000372407 IWS1Q96ST2 819 aa12.62□□□□□ -0.39
PTPRF-203ENST00000372407 ZSCAN10Q96SZ4 725 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-203ENST00000372407 PLCB1Q9NQ66 1216 aa12.62□□□□□ -0.39
PTPRF-203ENST00000372407 PARP2Q9UGN5 583 aa12.62□□□□□ -0.39
PTPRF-203ENST00000372407 FAM184BQ9ULE4 1060 aa12.62□□□□□ -0.39
PTPRF-203ENST00000372407 ADCK5Q3MIX3 580 aa12.62□□□□□ -0.39
PTPRF-203ENST00000372407 LMNTD2Q8IXW0 634 aa12.62□□□□□ -0.39
PTPRF-203ENST00000372407 KCNG1Q9UIX4 513 aa12.62□□□□□ -0.39
PTPRF-203ENST00000372407 EPN1Q9Y6I3 576 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-203ENST00000372407 CD19P15391 556 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 SLC39A14Q15043 492 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 ARHGAP44Q17R89 818 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 CPXCR1Q8N123 301 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 MCUR1Q96AQ8 359 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 DDX23Q9BUQ8 820 aaKnown RBP12.61□□□□□ -0.39
PTPRF-203ENST00000372407 PCDHA12Q9UN75 941 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 MYCLP12524 364 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-203ENST00000372407 SCG2P13521 617 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 MRPS9P82933 396 aaKnown RBP12.61□□□□□ -0.39
PTPRF-203ENST00000372407 UBE3CQ15386 1083 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 ZYXQ15942 572 aaKnown RBP12.61□□□□□ -0.39
PTPRF-203ENST00000372407 DENND2CQ68D51 928 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 DPP8Q6V1X1 898 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-203ENST00000372407 NSMFQ6X4W1 530 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 CMTR1Q8N1G2 835 aaKnown RBP12.61□□□□□ -0.39
PTPRF-203ENST00000372407 GJD4Q96KN9 370 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-203ENST00000372407 TULP4Q9NRJ4 1543 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 PREX1Q8TCU6 1659 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 HGSO14964 777 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-203ENST00000372407 PCCAP05165 728 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-203ENST00000372407 SDCCAG8Q86SQ7 713 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-203ENST00000372407 ARHGAP24Q8N264 748 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 CDC42BPGQ6DT37 1551 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 SCRN1Q12765 414 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 RASA3Q14644 834 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 MCTP2Q6DN12 878 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 GALNT17Q6IS24 598 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 TTLL7Q6ZT98 887 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 ZBTB38Q8NAP3 1195 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-203ENST00000372407 CFAP57Q96MR6 1250 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 CLIC6Q96NY7 704 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 PLEKHF1Q96S99 279 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 USTQ9Y2C2 406 aa12.61□□□□□ -0.39
PTPRF-203ENST00000372407 RICTORQ6R327 1708 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 FRMPD1Q5SYB0 1578 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 RGS16O15492 202 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-203ENST00000372407 OR52Z1P0C646 297 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 USH1GQ495M9 461 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 GSDMAQ96QA5 445 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 ZNF521Q96K83 1311 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 RNF40O75150 1001 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 LONRF2Q1L5Z9 754 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 NEK8Q86SG6 692 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 VPS52Q8N1B4 723 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 U2AF1L4Q8WU68 220 aaKnown RBP12.6□□□□□ -0.39
PTPRF-203ENST00000372407 PICK1Q9NRD5 415 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 BIN2Q9UBW5 565 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-203ENST00000372407 DBNLQ9UJU6 430 aaKnown RBP12.6□□□□□ -0.39
PTPRF-203ENST00000372407 ADCY9O60503 1353 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 KLRF2D3W0D1 207 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 DDX39AO00148 427 aaKnown RBP12.6□□□□□ -0.39
PTPRF-203ENST00000372407 NOL3O60936 208 aaKnown RBP12.6□□□□□ -0.39
PTPRF-203ENST00000372407 GMNNO75496 209 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 CYP21A2P08686 494 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 CTNNA1P35221 906 aaKnown RBP12.6□□□□□ -0.39
PTPRF-203ENST00000372407 TPD52P55327 224 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-203ENST00000372407 ITIH3Q06033 890 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 PTGDRQ13258 359 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 CEP85LQ5SZL2 805 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 ANKRD20A3Q5VUR7 823 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 CCDC62Q6P9F0 684 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 RABGGTAQ92696 567 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 UIMC1Q96RL1 719 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 LSM14BQ9BX40 385 aaKnown RBP12.6□□□□□ -0.39
PTPRF-203ENST00000372407 HOMER3Q9NSC5 361 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 MYO1AQ9UBC5 1043 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 KCNK3O14649 394 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 H2AFZP0C0S5 128 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms