RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 UIMC1Q96RL1 719 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 PSMB7Q99436 277 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 MAGEC2Q9UBF1 373 aaPredicted RBP13.65□□□□□ -0.22
CLIP3-201ENST00000360535 LUC7L2Q9Y383 392 aaKnown RBP13.65□□□□□ -0.22
CLIP3-201ENST00000360535 CAPN2P17655 700 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 TRIM21P19474 475 aaKnown RBP13.65□□□□□ -0.22
CLIP3-201ENST00000360535 BRD3Q15059 726 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 HSP90B2PQ58FF3 399 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 PDXDC2PQ6P474 469 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 GSPT2Q8IYD1 628 aaKnown RBP13.65□□□□□ -0.22
CLIP3-201ENST00000360535 TXLNBQ8N3L3 684 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 TMEM60Q9H2L4 133 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 MKNK2Q9HBH9 465 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 MINPP1Q9UNW1 487 aa13.65□□□□□ -0.22
CLIP3-201ENST00000360535 DDX60Q8IY21 1712 aaKnown RBP13.65□□□□□ -0.22
CLIP3-201ENST00000360535 KCNQ2O43526 872 aa13.65□□□□□ -0.23
CLIP3-201ENST00000360535 CALM1P0DP23 149 aa13.65□□□□□ -0.23
CLIP3-201ENST00000360535 CALM2P0DP24 149 aa13.65□□□□□ -0.23
CLIP3-201ENST00000360535 CALM3P0DP25 149 aa13.65□□□□□ -0.23
CLIP3-201ENST00000360535 USP5P45974 858 aa13.65□□□□□ -0.23
CLIP3-201ENST00000360535 E2F4Q16254 413 aa13.65□□□□□ -0.23
CLIP3-201ENST00000360535 BEND6Q5SZJ8 279 aaPredicted RBP13.65□□□□□ -0.23
CLIP3-201ENST00000360535 ZNF658Q5TYW1 1059 aaPredicted RBP13.65□□□□□ -0.23
CLIP3-201ENST00000360535 DTHD1Q6ZMT9 781 aa13.65□□□□□ -0.23
CLIP3-201ENST00000360535 BLIDQ8IZY5 108 aa13.65□□□□□ -0.23
CLIP3-201ENST00000360535 SLC44A5Q8NCS7 719 aa13.65□□□□□ -0.23
CLIP3-201ENST00000360535 CRNKL1Q9BZJ0 848 aaKnown RBP13.65□□□□□ -0.23
CLIP3-201ENST00000360535 DCP1AQ9NPI6 582 aaPredicted RBP13.65□□□□□ -0.23
CLIP3-201ENST00000360535 SAP30BPQ9UHR5 308 aaKnown RBP13.65□□□□□ -0.23
CLIP3-201ENST00000360535 RWDD2AQ9UIY3 292 aa13.65□□□□□ -0.23
CLIP3-201ENST00000360535 ANKRD65E5RJM6 399 aa13.64□□□□□ -0.23
CLIP3-201ENST00000360535 NDUFA10O95299 355 aa13.64□□□□□ -0.23
CLIP3-201ENST00000360535 MATR3P43243 847 aaKnown RBP eCLIP13.64□□□□□ -0.23
CLIP3-201ENST00000360535 AGPAT5Q9NUQ2 364 aa13.64□□□□□ -0.23
CLIP3-201ENST00000360535 DCCP43146 1447 aa13.64□□□□□ -0.23
CLIP3-201ENST00000360535 SLIT2O94813 1529 aa13.64□□□□□ -0.23
CLIP3-201ENST00000360535 PARP10Q53GL7 1025 aa13.64□□□□□ -0.23
CLIP3-201ENST00000360535 DZIP1Q86YF9 867 aaKnown RBP13.64□□□□□ -0.23
CLIP3-201ENST00000360535 C10orf67Q8IYJ2 551 aa13.64□□□□□ -0.23
CLIP3-201ENST00000360535 TNFRSF25Q93038 417 aa13.64□□□□□ -0.23
CLIP3-201ENST00000360535 DUSP10Q9Y6W6 482 aa13.64□□□□□ -0.23
CLIP3-201ENST00000360535 MYH13Q9UKX3 1938 aa13.64□□□□□ -0.23
CLIP3-201ENST00000360535 ATP8B1O43520 1251 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 ARHGAP25P42331 645 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 RAD51AP2Q09MP3 1159 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 DDB1Q16531 1140 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 TYW1BQ6NUM6 668 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 NUTM2BA6NNL0 878 aaPredicted RBP13.63□□□□□ -0.23
CLIP3-201ENST00000360535 NUTM2EB1AL46 878 aaPredicted RBP13.63□□□□□ -0.23
CLIP3-201ENST00000360535 ATP1A1P05023 1023 aaKnown RBP13.63□□□□□ -0.23
CLIP3-201ENST00000360535 MTIF2P46199 727 aaKnown RBP13.63□□□□□ -0.23
CLIP3-201ENST00000360535 DNA2P51530 1060 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 SPAG1Q07617 926 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 CASP8Q14790 479 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 PPP2R5BQ15173 497 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 LETM2Q2VYF4 491 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 OR8K1Q8NGG5 319 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 JADE2Q9NQC1 790 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 LIMA1Q9UHB6 759 aaKnown RBP13.63□□□□□ -0.23
CLIP3-201ENST00000360535 ZNF185O15231 689 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 TXNRD3Q86VQ6 643 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 PNMA1Q8ND90 353 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 NSUN4Q96CB9 384 aaKnown RBP13.63□□□□□ -0.23
CLIP3-201ENST00000360535 RABEP2Q9H5N1 569 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 ANAPC4Q9UJX5 808 aa13.63□□□□□ -0.23
CLIP3-201ENST00000360535 PFKFB3Q16875 520 aaPredicted RBP13.62□□□□□ -0.23
CLIP3-201ENST00000360535 CSGALNACT2Q8N6G5 542 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 CCDC148Q8NFR7 591 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 RIN2Q8WYP3 895 aaPredicted RBP13.62□□□□□ -0.23
CLIP3-201ENST00000360535 GPR101Q96P66 508 aaPredicted RBP13.62□□□□□ -0.23
CLIP3-201ENST00000360535 RMND1Q9NWS8 449 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 REXO2Q9Y3B8 237 aaKnown RBP13.62□□□□□ -0.23
CLIP3-201ENST00000360535 PLEKHG2Q9H7P9 1386 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 EIF3JO75822 258 aaKnown RBP13.62□□□□□ -0.23
CLIP3-201ENST00000360535 DDAH1O94760 285 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 IPO7O95373 1038 aaKnown RBP13.62□□□□□ -0.23
CLIP3-201ENST00000360535 ASIC1P78348 528 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 PIP4K2BP78356 416 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 TBC1D8BQ0IIM8 1120 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 SMCR8Q8TEV9 937 aaPredicted RBP13.62□□□□□ -0.23
CLIP3-201ENST00000360535 DISC1Q9NRI5 854 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 LRP6O75581 1613 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 HIBADHP31937 336 aaKnown RBP13.62□□□□□ -0.23
CLIP3-201ENST00000360535 KIF5BP33176 963 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 STIM1Q13586 685 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 LEKR1Q6ZMV7 388 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 IRF2BP1Q8IU81 584 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 MB21D1Q8N884 522 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 CCDC51Q96ER9 411 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 MMS19Q96T76 1030 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 BRIP1Q9BX63 1249 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 TRIM34Q9BYJ4 488 aa13.62□□□□□ -0.23
CLIP3-201ENST00000360535 COL1A1P02452 1464 aaPredicted RBP13.61□□□□□ -0.23
CLIP3-201ENST00000360535 ITGB4P16144 1822 aa13.61□□□□□ -0.23
CLIP3-201ENST00000360535 LRRIQ3A6PVS8 624 aaPredicted RBP13.61□□□□□ -0.23
CLIP3-201ENST00000360535 PSMA7O14818 248 aa13.61□□□□□ -0.23
CLIP3-201ENST00000360535 TRIM66O15016 1216 aa13.61□□□□□ -0.23
CLIP3-201ENST00000360535 NKRFO15226 690 aaKnown RBP eCLIP13.61□□□□□ -0.23
CLIP3-201ENST00000360535 ATP2B2Q01814 1243 aa13.61□□□□□ -0.23
CLIP3-201ENST00000360535 PDE4DQ08499 809 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms