RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 RASA1P20936 1047 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 C1QTNF8P60827 252 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 FAM160B1Q5W0V3 765 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 RNF207Q6ZRF8 634 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 CHST3Q7LGC8 479 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 TEX2Q8IWB9 1127 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 TEX13BQ9BXU2 312 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 DNAI2Q9GZS0 605 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 NEDD4P46934 1319 aa10.51□□□□□ -0.73
UPF2-202ENST00000357604 CAPN2P17655 700 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 CCDC73Q6ZRK6 1079 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 TMX2Q9Y320 296 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 R3HCC1Q9Y3T6 440 aaKnown RBP10.5□□□□□ -0.73
UPF2-202ENST00000357604 HOXC6P09630 235 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 SMARCA1P28370 1054 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 RHBDL3P58872 404 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 EXOC8Q8IYI6 725 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 CALML4Q96GE6 196 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 M0QZ92 97 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 ECM2O94769 699 aaPredicted RBP10.5□□□□□ -0.73
UPF2-202ENST00000357604 PLCD1P51178 756 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 MYPNQ86TC9 1320 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 SLX4Q8IY92 1834 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 TBC1D10CQ8IV04 446 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 CCDC155Q8N6L0 562 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 ZSCAN16Q9H4T2 348 aaPredicted RBP10.5□□□□□ -0.73
UPF2-202ENST00000357604 EFCC1Q9HA90 598 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 MLXIPQ9HAP2 919 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 ZSWIM6Q9HCJ5 1215 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 PCDHA1Q9Y5I3 950 aa10.5□□□□□ -0.73
UPF2-202ENST00000357604 ZBTB5O15062 677 aa10.49□□□□□ -0.73
UPF2-202ENST00000357604 ATP2B1P20020 1258 aa10.49□□□□□ -0.73
UPF2-202ENST00000357604 CHMP4BP1P59074 171 aa10.49□□□□□ -0.73
UPF2-202ENST00000357604 TPRNQ4KMQ1 711 aa10.49□□□□□ -0.73
UPF2-202ENST00000357604 RASAL3Q86YV0 1011 aa10.49□□□□□ -0.73
UPF2-202ENST00000357604 CKAP2LQ8IYA6 745 aa10.49□□□□□ -0.73
UPF2-202ENST00000357604 RNF216Q9NWF9 866 aaPredicted RBP10.49□□□□□ -0.73
UPF2-202ENST00000357604 ATRNL1Q5VV63 1379 aa10.49□□□□□ -0.73
UPF2-202ENST00000357604 KBTBD13C9JR72 458 aa10.49□□□□□ -0.73
UPF2-202ENST00000357604 NCBP1Q09161 790 aaKnown RBP10.49□□□□□ -0.73
UPF2-202ENST00000357604 AP3B2Q13367 1082 aa10.49□□□□□ -0.73
UPF2-202ENST00000357604 NONOQ15233 471 aaKnown RBP eCLIP10.49□□□□□ -0.73
UPF2-202ENST00000357604 GMCL1Q96IK5 515 aa10.49□□□□□ -0.73
UPF2-202ENST00000357604 V9GY48 417 aaPredicted RBP10.49□□□□□ -0.73
UPF2-202ENST00000357604 PKN2Q16513 984 aaKnown RBP10.49□□□□□ -0.73
UPF2-202ENST00000357604 CYP4F22Q6NT55 531 aa10.49□□□□□ -0.73
UPF2-202ENST00000357604 NBPF3Q9H094 633 aa10.49□□□□□ -0.73
UPF2-202ENST00000357604 AK2P54819 239 aa10.49□□□□□ -0.73
UPF2-202ENST00000357604 SP3Q02447 781 aa10.49□□□□□ -0.73
UPF2-202ENST00000357604 FCHSD1Q86WN1 690 aa10.49□□□□□ -0.73
UPF2-202ENST00000357604 RNF146Q9NTX7 359 aa10.49□□□□□ -0.73
UPF2-202ENST00000357604 COL11A2P13942 1736 aaPredicted RBP10.48□□□□□ -0.73
UPF2-202ENST00000357604 CYP21A2P08686 494 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 SCG2P13521 617 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 RAB11FIP4Q86YS3 637 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 TBC1D32Q96NH3 1257 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 SAGE1Q9NXZ1 904 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 CACNA1SQ13698 1873 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 SETQ01105 290 aaPredicted RBP10.48□□□□□ -0.73
UPF2-202ENST00000357604 STXBP4Q6ZWJ1 553 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 ADGRA1Q86SQ6 560 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 REXO1Q8N1G1 1221 aaKnown RBP10.48□□□□□ -0.73
UPF2-202ENST00000357604 EPB41L4AQ9HCS5 686 aaPredicted RBP10.48□□□□□ -0.73
UPF2-202ENST00000357604 CHMP5Q9NZZ3 219 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 MAST2Q6P0Q8 1798 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 SHTN1A0MZ66 631 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 SMCO2A6NFE2 343 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 SLC10A3P09131 477 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 GJB2P29033 226 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 INPP5BP32019 993 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 SHMT1P34896 483 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 STXBP2Q15833 593 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 RNF26Q9BY78 433 aaPredicted RBP10.48□□□□□ -0.73
UPF2-202ENST00000357604 RAVER2Q9HCJ3 691 aaKnown RBP10.48□□□□□ -0.73
UPF2-202ENST00000357604 DDX4Q9NQI0 724 aaKnown RBP10.48□□□□□ -0.73
UPF2-202ENST00000357604 ZSWIM5Q9P217 1185 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 ZHX1Q9UKY1 873 aaPredicted RBP10.48□□□□□ -0.73
UPF2-202ENST00000357604 ZNF215Q9UL58 517 aaPredicted RBP10.48□□□□□ -0.73
UPF2-202ENST00000357604 STRNO43815 780 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 DSG3P32926 999 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 SLFN12Q8IYM2 578 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 SLC44A5Q8NCS7 719 aa10.48□□□□□ -0.73
UPF2-202ENST00000357604 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.48□□□□□ -0.73
UPF2-202ENST00000357604 PFKFB2O60825 505 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 BRAPQ7Z569 592 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 RSPH3Q86UC2 560 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 PGAP2Q9UHJ9 254 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 KCNG1Q9UIX4 513 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 PRPF3O43395 683 aaKnown RBP10.47□□□□□ -0.73
UPF2-202ENST00000357604 SHCBP1Q8NEM2 672 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 NSUN6Q8TEA1 469 aaKnown RBP10.47□□□□□ -0.73
UPF2-202ENST00000357604 DDX11L8A8MPP1 907 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 TRPA1O75762 1119 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 AMPD3Q01432 767 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 TTLL4Q14679 1199 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 TSGA10IPQ3SY00 556 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 ODR4Q5SWX8 454 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 ROBO3Q96MS0 1386 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 DLEC1Q9Y238 1755 aa10.47□□□□□ -0.73
UPF2-202ENST00000357604 TLR3O15455 904 aaKnown RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms