RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 MORC3Q14149 939 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 SPATS2Q86XZ4 545 aaKnown RBP12.97□□□□□ -0.33
COL9A1-202ENST00000357250 CMTR1Q8N1G2 835 aaKnown RBP12.97□□□□□ -0.33
COL9A1-202ENST00000357250 RNF26Q9BY78 433 aaPredicted RBP12.97□□□□□ -0.33
COL9A1-202ENST00000357250 MAP3K15Q6ZN16 1313 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 DCUN1D2Q6PH85 259 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 DYMQ7RTS9 669 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 TGFBRAP1Q8WUH2 860 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 P3H4Q92791 437 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 SEC31BQ9NQW1 1179 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 POLR3EQ9NVU0 708 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 HAUS2Q9NVX0 235 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 IKBKBO14920 756 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 NR1I2O75469 434 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 P4HA1P13674 534 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 PDIA3P30101 505 aaKnown RBP12.97□□□□□ -0.33
COL9A1-202ENST00000357250 TNFAIP1Q13829 316 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 RRAGAQ7L523 313 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 CACNA2D3Q8IZS8 1091 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 PNMA1Q8ND90 353 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 A0A1B0GUA9 196 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 hCG_1984214I3L0E3 225 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 NOP56O00567 594 aaKnown RBP12.97□□□□□ -0.33
COL9A1-202ENST00000357250 PDE8BO95263 885 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 MRPS9P82933 396 aaKnown RBP12.97□□□□□ -0.33
COL9A1-202ENST00000357250 SLC39A14Q15043 492 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 ZNF713Q8N859 430 aaPredicted RBP12.97□□□□□ -0.33
COL9A1-202ENST00000357250 PCDHA7Q9UN72 937 aa12.97□□□□□ -0.33
COL9A1-202ENST00000357250 GMNNO75496 209 aa12.96□□□□□ -0.33
COL9A1-202ENST00000357250 PHKA1P46020 1223 aa12.96□□□□□ -0.33
COL9A1-202ENST00000357250 GBP6Q6ZN66 633 aa12.96□□□□□ -0.33
COL9A1-202ENST00000357250 KRT26Q7Z3Y9 468 aa12.96□□□□□ -0.33
COL9A1-202ENST00000357250 ZNF589Q86UQ0 364 aaPredicted RBP12.96□□□□□ -0.33
COL9A1-202ENST00000357250 AK8Q96MA6 479 aa12.96□□□□□ -0.33
COL9A1-202ENST00000357250 MIS12Q9H081 205 aa12.96□□□□□ -0.33
COL9A1-202ENST00000357250 ARMCX3Q9UH62 379 aaPredicted RBP12.96□□□□□ -0.33
COL9A1-202ENST00000357250 ATP8B1O43520 1251 aa12.96□□□□□ -0.33
COL9A1-202ENST00000357250 HPDP32754 393 aaPredicted RBP12.96□□□□□ -0.33
COL9A1-202ENST00000357250 CRKLP46109 303 aaKnown RBP12.96□□□□□ -0.33
COL9A1-202ENST00000357250 TMED8Q6PL24 325 aaPredicted RBP12.96□□□□□ -0.33
COL9A1-202ENST00000357250 TMC4Q7Z404 712 aa12.96□□□□□ -0.33
COL9A1-202ENST00000357250 GNPTABQ3T906 1256 aa12.96□□□□□ -0.34
COL9A1-202ENST00000357250 RETREG2Q8NC44 543 aa12.96□□□□□ -0.34
COL9A1-202ENST00000357250 SLC17A8Q8NDX2 589 aa12.96□□□□□ -0.34
COL9A1-202ENST00000357250 CABS1Q96KC9 395 aa12.96□□□□□ -0.34
COL9A1-202ENST00000357250 MRPL11Q9Y3B7 192 aaKnown RBP12.96□□□□□ -0.34
COL9A1-202ENST00000357250 SOS2Q07890 1332 aaPredicted RBP12.96□□□□□ -0.34
COL9A1-202ENST00000357250 GAS7O60861 476 aa12.96□□□□□ -0.34
COL9A1-202ENST00000357250 SASH1O94885 1247 aa12.96□□□□□ -0.34
COL9A1-202ENST00000357250 SP4Q02446 784 aa12.96□□□□□ -0.34
COL9A1-202ENST00000357250 USPL1Q5W0Q7 1092 aa12.96□□□□□ -0.34
COL9A1-202ENST00000357250 SND1Q7KZF4 910 aaKnown RBP eCLIP12.96□□□□□ -0.34
COL9A1-202ENST00000357250 C2CD5Q86YS7 1000 aa12.96□□□□□ -0.34
COL9A1-202ENST00000357250 SDR42E1Q8WUS8 393 aa12.96□□□□□ -0.34
COL9A1-202ENST00000357250 CCDC17Q96LX7 622 aa12.96□□□□□ -0.34
COL9A1-202ENST00000357250 PCDHA12Q9UN75 941 aa12.96□□□□□ -0.34
COL9A1-202ENST00000357250 CLEC11AQ9Y240 323 aa12.96□□□□□ -0.34
COL9A1-202ENST00000357250 COL4A3BPQ9Y5P4 624 aa12.96□□□□□ -0.34
COL9A1-202ENST00000357250 BZW2Q9Y6E2 419 aaKnown RBP12.96□□□□□ -0.34
COL9A1-202ENST00000357250 ITIH3Q06033 890 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 LRRC8AQ8IWT6 810 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 CCDC105Q8IYK2 499 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 ODF2LQ9ULJ1 636 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 PPP2R2CQ9Y2T4 447 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 DIP2CQ9Y2E4 1556 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 NOL3O60936 208 aaKnown RBP12.95□□□□□ -0.34
COL9A1-202ENST00000357250 IGKV5-2P06315 115 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 MAPK8IP2Q13387 824 aaPredicted RBP12.95□□□□□ -0.34
COL9A1-202ENST00000357250 TRMT44Q8IYL2 757 aaKnown RBP12.95□□□□□ -0.34
COL9A1-202ENST00000357250 LARGE2Q8N3Y3 721 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 GRK7Q8WTQ7 553 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 UIMC1Q96RL1 719 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 MED4Q9NPJ6 270 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 IVNS1ABPQ9Y6Y0 642 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 QRICH2Q9H0J4 1663 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 IL6STP40189 918 aaPredicted RBP12.95□□□□□ -0.34
COL9A1-202ENST00000357250 DLGAP5Q15398 846 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 MFSD14BQ5SR56 506 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 RUNDC3BQ96NL0 473 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 PODXL2Q9NZ53 605 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 PKD2L1Q9P0L9 805 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 LARSQ9P2J5 1176 aaKnown RBP12.95□□□□□ -0.34
COL9A1-202ENST00000357250 SPATA31A3Q5VYP0 1347 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 ADGRL3Q9HAR2 1447 aa12.95□□□□□ -0.34
COL9A1-202ENST00000357250 CFBP00751 764 aa12.94□□□□□ -0.34
COL9A1-202ENST00000357250 GPBP1Q86WP2 473 aa12.94□□□□□ -0.34
COL9A1-202ENST00000357250 ZFP91Q96JP5 570 aaPredicted RBP12.94□□□□□ -0.34
COL9A1-202ENST00000357250 PSTPIP2Q9H939 334 aa12.94□□□□□ -0.34
COL9A1-202ENST00000357250 FAM207AQ9NSI2 230 aaPredicted RBP12.94□□□□□ -0.34
COL9A1-202ENST00000357250 EEF1GP26641 437 aaKnown RBP12.94□□□□□ -0.34
COL9A1-202ENST00000357250 ADD1P35611 737 aaKnown RBP12.94□□□□□ -0.34
COL9A1-202ENST00000357250 NEDD9Q14511 834 aa12.94□□□□□ -0.34
COL9A1-202ENST00000357250 TAF12Q16514 161 aa12.94□□□□□ -0.34
COL9A1-202ENST00000357250 AOC3Q16853 763 aa12.94□□□□□ -0.34
COL9A1-202ENST00000357250 HHATQ5VTY9 493 aa12.94□□□□□ -0.34
COL9A1-202ENST00000357250 DENND2CQ68D51 928 aa12.94□□□□□ -0.34
COL9A1-202ENST00000357250 TYW1BQ6NUM6 668 aa12.94□□□□□ -0.34
COL9A1-202ENST00000357250 SMC1BQ8NDV3 1235 aa12.94□□□□□ -0.34
COL9A1-202ENST00000357250 AS3MTQ9HBK9 375 aa12.94□□□□□ -0.34
COL9A1-202ENST00000357250 CPSF1Q10570 1443 aaKnown RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms