RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ADAT2Q7Z6V5 191 aaKnown RBP21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 SPATS2LQ9NUQ6 558 aaKnown RBP21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 USTQ9Y2C2 406 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 CEP120Q8N960 986 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 KRT12Q99456 494 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 ZMYM6O95789 1325 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 IQGAP3Q86VI3 1631 aa21.53■■□□□ 1.04
CCDC88B-202ENST00000356786 CYP21A2P08686 494 aa21.52■■□□□ 1.04
CCDC88B-202ENST00000356786 LINC00301Q8NCQ3 95 aa21.52■■□□□ 1.04
CCDC88B-202ENST00000356786 CCDC197Q8NCU1 140 aa21.52■■□□□ 1.04
CCDC88B-202ENST00000356786 COBLO75128 1261 aa21.52■■□□□ 1.04
CCDC88B-202ENST00000356786 FANCBQ8NB91 859 aa21.52■■□□□ 1.04
CCDC88B-202ENST00000356786 ACRBPQ8NEB7 543 aa21.52■■□□□ 1.04
CCDC88B-202ENST00000356786 SHROOM2Q13796 1616 aa21.52■■□□□ 1.04
CCDC88B-202ENST00000356786 ARAP3Q8WWN8 1544 aa21.52■■□□□ 1.04
CCDC88B-202ENST00000356786 RASIP1Q5U651 963 aa21.52■■□□□ 1.03
CCDC88B-202ENST00000356786 GSDMAQ96QA5 445 aa21.52■■□□□ 1.03
CCDC88B-202ENST00000356786 PKD2L1Q9P0L9 805 aa21.52■■□□□ 1.03
CCDC88B-202ENST00000356786 PCDHB13Q9Y5F0 798 aa21.52■■□□□ 1.03
CCDC88B-202ENST00000356786 SOWAHDA6NJG2 315 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 BCRP11274 1271 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 ICE2Q659A1 982 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 VSTM4Q8IW00 320 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 RILPQ96NA2 401 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 DNM3Q9UQ16 869 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 NEURL1BA8MQ27 555 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 ATP1A3P13637 1013 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 VPS41P49754 854 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 NCAPH2Q6IBW4 605 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 EPB41L5Q9HCM4 733 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 INTS9Q9NV88 658 aaKnown RBP21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 SSX2IPQ9Y2D8 614 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 KIF1BO60333 1816 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 RPN1P04843 607 aaKnown RBP21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 TEX11Q8IYF3 940 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 LPIN2Q92539 896 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 HAUS7Q99871 368 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 TET3O43151 1660 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 SYNMO15061 1565 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 LRRD1A4D1F6 860 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 HEXIM1O94992 359 aaKnown RBP21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 LUC7L3O95232 432 aaKnown RBP21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 IL2RBP14784 551 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 MAGEA9P43362 315 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 EIF6P56537 245 aaKnown RBP21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 KMT5BQ4FZB7 885 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 TMEM87AQ8NBN3 555 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 SYMPKQ92797 1274 aaKnown RBP21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 PLEKHF1Q96S99 279 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 NUF2Q9BZD4 464 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 TPX2Q9ULW0 747 aaKnown RBP21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 KAT6BQ8WYB5 2073 aa21.51■■□□□ 1.03
CCDC88B-202ENST00000356786 PABPN1LA6NDY0 278 aaKnown RBP21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 RBBP5Q15291 538 aaKnown RBP21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 MYOCDQ8IZQ8 938 aa21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 GCNT3O95395 438 aa21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 H2AFZP0C0S5 128 aa21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 POLR2FP61218 127 aaKnown RBP21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 H2AFVQ71UI9 128 aa21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 RASSF7Q02833 373 aa21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 NAA35Q5VZE5 725 aa21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 ZNF354CQ86Y25 554 aa21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 KSR1Q8IVT5 923 aa21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 TSPOAP1O95153 1857 aa21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 A1BGP04217 495 aa21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 XRCC5P13010 732 aaKnown RBP21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 REXO1Q8N1G1 1221 aaKnown RBP21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 SPATA5Q8NB90 893 aa21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 TUBGCP2Q9BSJ2 902 aa21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 ABCC3O15438 1527 aa21.5■■□□□ 1.03
CCDC88B-202ENST00000356786 GNA14O95837 355 aa21.49■■□□□ 1.03
CCDC88B-202ENST00000356786 ITIH3Q06033 890 aa21.49■■□□□ 1.03
CCDC88B-202ENST00000356786 PTGDRQ13258 359 aa21.49■■□□□ 1.03
CCDC88B-202ENST00000356786 MAP7Q14244 749 aa21.49■■□□□ 1.03
CCDC88B-202ENST00000356786 PPP6R2O75170 966 aa21.49■■□□□ 1.03
CCDC88B-202ENST00000356786 SUN1O94901 812 aa21.49■■□□□ 1.03
CCDC88B-202ENST00000356786 ADCY7P51828 1080 aa21.49■■□□□ 1.03
CCDC88B-202ENST00000356786 SP4Q02446 784 aa21.49■■□□□ 1.03
CCDC88B-202ENST00000356786 LGSNQ5TDP6 509 aa21.49■■□□□ 1.03
CCDC88B-202ENST00000356786 GBP7Q8N8V2 638 aaPredicted RBP21.49■■□□□ 1.03
CCDC88B-202ENST00000356786 SH3TC1Q8TE82 1336 aa21.49■■□□□ 1.03
CCDC88B-202ENST00000356786 SMYD4Q8IYR2 804 aaPredicted RBP21.49■■□□□ 1.03
CCDC88B-202ENST00000356786 MRPL44Q9H9J2 332 aaKnown RBP21.49■■□□□ 1.03
CCDC88B-202ENST00000356786 ZCCHC17Q9NP64 241 aaKnown RBP21.49■■□□□ 1.03
CCDC88B-202ENST00000356786 HARSP12081 509 aaKnown RBP21.48■■□□□ 1.03
CCDC88B-202ENST00000356786 CCDC13Q8IYE1 715 aa21.48■■□□□ 1.03
CCDC88B-202ENST00000356786 CARMIL3Q8ND23 1372 aa21.48■■□□□ 1.03
CCDC88B-202ENST00000356786 ARHGEF35A5YM69 484 aa21.48■■□□□ 1.03
CCDC88B-202ENST00000356786 SLFNL1Q499Z3 407 aa21.48■■□□□ 1.03
CCDC88B-202ENST00000356786 MCTP2Q6DN12 878 aa21.48■■□□□ 1.03
CCDC88B-202ENST00000356786 MYCT1Q8N699 235 aa21.48■■□□□ 1.03
CCDC88B-202ENST00000356786 SAMSN1Q9NSI8 373 aaKnown RBP21.48■■□□□ 1.03
CCDC88B-202ENST00000356786 AATFQ9NY61 560 aaKnown RBP eCLIP21.48■■□□□ 1.03
CCDC88B-202ENST00000356786 BAG2O95816 211 aa21.48■■□□□ 1.03
CCDC88B-202ENST00000356786 MAIP1Q8WWC4 291 aa21.48■■□□□ 1.03
CCDC88B-202ENST00000356786 ACSBG1Q96GR2 724 aa21.48■■□□□ 1.03
CCDC88B-202ENST00000356786 B4DLN1 442 aa21.48■■□□□ 1.03
CCDC88B-202ENST00000356786 IFNB1P01574 187 aa21.48■■□□□ 1.03
CCDC88B-202ENST00000356786 NNTQ13423 1086 aa21.48■■□□□ 1.03
CCDC88B-202ENST00000356786 DCUN1D2Q6PH85 259 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms