RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 ZNF865P0CJ78 1059 aaPredicted RBP17.23■□□□□ 0.35
PRPF40A-201ENST00000354363 RARBP10826 455 aa17.23■□□□□ 0.35
PRPF40A-201ENST00000354363 TRIM60Q495X7 471 aa17.23■□□□□ 0.35
PRPF40A-201ENST00000354363 FERMT2Q96AC1 680 aa17.23■□□□□ 0.35
PRPF40A-201ENST00000354363 NACAP1Q9BZK3 213 aa17.23■□□□□ 0.35
PRPF40A-201ENST00000354363 XPNPEP3Q9NQH7 507 aa17.23■□□□□ 0.35
PRPF40A-201ENST00000354363 SYNPO2Q9UMS6 1093 aa17.23■□□□□ 0.35
PRPF40A-201ENST00000354363 ATP2A1O14983 1001 aa17.22■□□□□ 0.35
PRPF40A-201ENST00000354363 ZBED4O75132 1171 aa17.22■□□□□ 0.35
PRPF40A-201ENST00000354363 TTLL1O95922 423 aa17.22■□□□□ 0.35
PRPF40A-201ENST00000354363 CPXCR1Q8N123 301 aa17.22■□□□□ 0.35
PRPF40A-201ENST00000354363 LRRC47Q8N1G4 583 aaKnown RBP17.22■□□□□ 0.35
PRPF40A-201ENST00000354363 NEDD1Q8NHV4 660 aa17.22■□□□□ 0.35
PRPF40A-201ENST00000354363 PHF24Q9UPV7 400 aa17.22■□□□□ 0.35
PRPF40A-201ENST00000354363 DNAJC25-GNG10A0A024R161 153 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 PGK1P00558 417 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 TSPY3P0CV98 308 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 TSPY8P0CW00 308 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 MX1P20591 662 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 PDE4BQ07343 736 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 PPARAQ07869 468 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 C1orf53Q5VUE5 145 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 GMCL1P1Q8NEA9 526 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 KIFC2Q96AC6 838 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 NAPBQ9H115 298 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 SLC38A10Q9HBR0 1119 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 RAVER2Q9HCJ3 691 aaKnown RBP17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 FEM1BQ9UK73 627 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 CNPY2Q9Y2B0 182 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 CTDP1Q9Y5B0 961 aaPredicted RBP17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 SALL3Q9BXA9 1300 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 LAMA2P24043 3122 aaKnown RBP17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 AKR1A1P14550 325 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 SLC4A3P48751 1232 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 SLFN13Q68D06 897 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 MSL3Q8N5Y2 521 aaKnown RBP17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 LENG1Q96BZ8 264 aaPredicted RBP17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 DDX11Q96FC9 970 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 PRDM5Q9NQX1 630 aaPredicted RBP17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 PDLIM7Q9NR12 457 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 MTMR10Q9NXD2 777 aa17.21■□□□□ 0.35
PRPF40A-201ENST00000354363 SYNGAP1Q96PV0 1343 aa17.2■□□□□ 0.34
PRPF40A-201ENST00000354363 SNAI1O95863 264 aaPredicted RBP17.2■□□□□ 0.34
PRPF40A-201ENST00000354363 SLC3A2P08195 630 aaKnown RBP17.2■□□□□ 0.34
PRPF40A-201ENST00000354363 RRP1P56182 461 aaKnown RBP17.2■□□□□ 0.34
PRPF40A-201ENST00000354363 TFAP4Q01664 338 aa17.2■□□□□ 0.34
PRPF40A-201ENST00000354363 MAMDC4Q6UXC1 1216 aa17.2■□□□□ 0.34
PRPF40A-201ENST00000354363 RNF180Q86T96 592 aa17.2■□□□□ 0.34
PRPF40A-201ENST00000354363 SLC17A8Q8NDX2 589 aa17.2■□□□□ 0.34
PRPF40A-201ENST00000354363 FOXP2O15409 715 aa17.19■□□□□ 0.34
PRPF40A-201ENST00000354363 BMP3P12645 472 aa17.19■□□□□ 0.34
PRPF40A-201ENST00000354363 CCDC129Q6ZRS4 1044 aa17.19■□□□□ 0.34
PRPF40A-201ENST00000354363 SH3RF1Q7Z6J0 888 aa17.19■□□□□ 0.34
PRPF40A-201ENST00000354363 TRIM43BA6NCK2 446 aa17.18■□□□□ 0.34
PRPF40A-201ENST00000354363 ADAMTS4O75173 837 aa17.18■□□□□ 0.34
PRPF40A-201ENST00000354363 TLE2Q04725 743 aa17.18■□□□□ 0.34
PRPF40A-201ENST00000354363 ZNF467Q7Z7K2 595 aaPredicted RBP17.18■□□□□ 0.34
PRPF40A-201ENST00000354363 BADQ92934 168 aa17.18■□□□□ 0.34
PRPF40A-201ENST00000354363 TRIM43Q96BQ3 446 aaPredicted RBP17.18■□□□□ 0.34
PRPF40A-201ENST00000354363 FGD4Q96M96 766 aa17.18■□□□□ 0.34
PRPF40A-201ENST00000354363 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.18■□□□□ 0.34
PRPF40A-201ENST00000354363 A0A1W2PQ45 241 aaPredicted RBP17.18■□□□□ 0.34
PRPF40A-201ENST00000354363 A0A1W2PQY0 241 aa17.18■□□□□ 0.34
PRPF40A-201ENST00000354363 OAZ1P54368 228 aa17.18■□□□□ 0.34
PRPF40A-201ENST00000354363 CHST13Q8NET6 341 aa17.18■□□□□ 0.34
PRPF40A-201ENST00000354363 FBXO40Q9UH90 709 aa17.18■□□□□ 0.34
PRPF40A-201ENST00000354363 ZHX1Q9UKY1 873 aaPredicted RBP17.18■□□□□ 0.34
PRPF40A-201ENST00000354363 FAM184BQ9ULE4 1060 aa17.18■□□□□ 0.34
PRPF40A-201ENST00000354363 STXBP5LQ9Y2K9 1186 aa17.18■□□□□ 0.34
PRPF40A-201ENST00000354363 SYNRGQ9UMZ2 1314 aa17.17■□□□□ 0.34
PRPF40A-201ENST00000354363 TMEM232C9JQI7 657 aa17.17■□□□□ 0.34
PRPF40A-201ENST00000354363 POTEB2H3BUK9 544 aa17.17■□□□□ 0.34
PRPF40A-201ENST00000354363 CTDSPL2Q05D32 466 aa17.17■□□□□ 0.34
PRPF40A-201ENST00000354363 SHHQ15465 462 aa17.17■□□□□ 0.34
PRPF40A-201ENST00000354363 ANKRD45Q5TZF3 282 aa17.17■□□□□ 0.34
PRPF40A-201ENST00000354363 ANKRD35Q8N283 1001 aa17.17■□□□□ 0.34
PRPF40A-201ENST00000354363 CRBNQ96SW2 442 aa17.17■□□□□ 0.34
PRPF40A-201ENST00000354363 TSEN34Q9BSV6 310 aaKnown RBP17.17■□□□□ 0.34
PRPF40A-201ENST00000354363 INCENPQ9NQS7 918 aa17.17■□□□□ 0.34
PRPF40A-201ENST00000354363 LCTP09848 1927 aa17.16■□□□□ 0.34
PRPF40A-201ENST00000354363 FDX1P10109 184 aa17.16■□□□□ 0.34
PRPF40A-201ENST00000354363 STAT2P52630 851 aa17.16■□□□□ 0.34
PRPF40A-201ENST00000354363 C9orf50Q5SZB4 431 aa17.16■□□□□ 0.34
PRPF40A-201ENST00000354363 FAM109BQ6ICB4 259 aaPredicted RBP17.16■□□□□ 0.34
PRPF40A-201ENST00000354363 KLHDC9Q8NEP7 349 aa17.16■□□□□ 0.34
PRPF40A-201ENST00000354363 GMCL1Q96IK5 515 aa17.16■□□□□ 0.34
PRPF40A-201ENST00000354363 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.16■□□□□ 0.34
PRPF40A-201ENST00000354363 ZBTB47Q9UFB7 747 aaPredicted RBP17.16■□□□□ 0.34
PRPF40A-201ENST00000354363 ISY1Q9ULR0 285 aaKnown RBP17.16■□□□□ 0.34
PRPF40A-201ENST00000354363 TACC3Q9Y6A5 838 aa17.16■□□□□ 0.34
PRPF40A-201ENST00000354363 DUSP11O75319 330 aaKnown RBP17.15■□□□□ 0.34
PRPF40A-201ENST00000354363 CLTBP09497 229 aa17.15■□□□□ 0.34
PRPF40A-201ENST00000354363 MCCP23508 829 aa17.15■□□□□ 0.34
PRPF40A-201ENST00000354363 SLC1A4P43007 532 aa17.15■□□□□ 0.34
PRPF40A-201ENST00000354363 ACVR2BQ13705 512 aa17.15■□□□□ 0.34
PRPF40A-201ENST00000354363 PPP4R3BQ5MIZ7 849 aa17.15■□□□□ 0.34
PRPF40A-201ENST00000354363 VPS53Q5VIR6 699 aa17.15■□□□□ 0.34
PRPF40A-201ENST00000354363 FAM160B2Q86V87 743 aa17.15■□□□□ 0.34
PRPF40A-201ENST00000354363 CHURC1Q8WUH1 139 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms