RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 SMTNP53814 917 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 YWHAEP62258 255 aaKnown RBP13.78□□□□□ -0.2
COL6A3-203ENST00000353578 SNX1Q13596 522 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 CREB3L3Q68CJ9 461 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 CACTINQ8WUQ7 758 aaKnown RBP13.78□□□□□ -0.2
COL6A3-203ENST00000353578 CDKL2Q92772 493 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 PPCSQ9HAB8 311 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 GARSP41250 739 aaKnown RBP13.78□□□□□ -0.2
COL6A3-203ENST00000353578 PFDN6O15212 129 aa13.77□□□□□ -0.2
COL6A3-203ENST00000353578 DAB1O75553 588 aa13.77□□□□□ -0.2
COL6A3-203ENST00000353578 TNFAIP3P21580 790 aa13.77□□□□□ -0.2
COL6A3-203ENST00000353578 TRPC1P48995 793 aa13.77□□□□□ -0.2
COL6A3-203ENST00000353578 NUDCD3Q8IVD9 361 aa13.77□□□□□ -0.2
COL6A3-203ENST00000353578 TPCN1Q9ULQ1 816 aa13.77□□□□□ -0.2
COL6A3-203ENST00000353578 PGRMC1O00264 195 aaKnown RBP13.77□□□□□ -0.2
COL6A3-203ENST00000353578 CASP10Q92851 521 aa13.77□□□□□ -0.2
COL6A3-203ENST00000353578 SKOR1P84550 965 aa13.77□□□□□ -0.2
COL6A3-203ENST00000353578 PLEKHM2Q8IWE5 1019 aa13.77□□□□□ -0.21
COL6A3-203ENST00000353578 NEK9Q8TD19 979 aa13.77□□□□□ -0.21
COL6A3-203ENST00000353578 CASP14P31944 242 aa13.77□□□□□ -0.21
COL6A3-203ENST00000353578 ARID5AQ03989 594 aa13.77□□□□□ -0.21
COL6A3-203ENST00000353578 NONOQ15233 471 aaKnown RBP eCLIP13.77□□□□□ -0.21
COL6A3-203ENST00000353578 TRIM33Q9UPN9 1127 aa13.77□□□□□ -0.21
COL6A3-203ENST00000353578 ADCY3O60266 1144 aa13.77□□□□□ -0.21
COL6A3-203ENST00000353578 ZNF189O75820 626 aaPredicted RBP13.77□□□□□ -0.21
COL6A3-203ENST00000353578 SLC12A2P55011 1212 aa13.77□□□□□ -0.21
COL6A3-203ENST00000353578 RRS1Q15050 365 aaKnown RBP13.77□□□□□ -0.21
COL6A3-203ENST00000353578 MYSM1Q5VVJ2 828 aa13.77□□□□□ -0.21
COL6A3-203ENST00000353578 CRNKL1Q9BZJ0 848 aaKnown RBP13.77□□□□□ -0.21
COL6A3-203ENST00000353578 BLOC1S6Q9UL45 172 aa13.77□□□□□ -0.21
COL6A3-203ENST00000353578 RPS6KB1P23443 525 aa13.77□□□□□ -0.21
COL6A3-203ENST00000353578 SARM1Q6SZW1 724 aa13.77□□□□□ -0.21
COL6A3-203ENST00000353578 TMEM87AQ8NBN3 555 aa13.77□□□□□ -0.21
COL6A3-203ENST00000353578 LRRC37BQ96QE4 947 aa13.77□□□□□ -0.21
COL6A3-203ENST00000353578 TMEM63CQ9P1W3 806 aa13.77□□□□□ -0.21
COL6A3-203ENST00000353578 CCDC188H7C350 402 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 RHPN1Q8TCX5 695 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 KIFC2Q96AC6 838 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 MTRQ99707 1265 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 ACADSP16219 412 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 CUEDC2Q9H467 287 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 HELLSQ9NRZ9 838 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 IQGAP2Q13576 1575 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 MDM2Q00987 491 aaPredicted RBP13.76□□□□□ -0.21
COL6A3-203ENST00000353578 FAM192AQ9GZU8 254 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 KLHL30Q0D2K2 578 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 TRAIPQ9BWF2 469 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 B4DLN1 442 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 MRPL12P52815 198 aaKnown RBP13.76□□□□□ -0.21
COL6A3-203ENST00000353578 FMO2Q99518 471 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 MEFVO15553 781 aaPredicted RBP13.76□□□□□ -0.21
COL6A3-203ENST00000353578 SH3BP5O60239 455 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 CHMLP26374 656 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 MRPL28Q13084 256 aaKnown RBP13.76□□□□□ -0.21
COL6A3-203ENST00000353578 MMEL1Q495T6 779 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 BPIFA3Q9BQP9 254 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 SEMA3FQ13275 785 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 CEP55Q53EZ4 464 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 PIK3R5Q8WYR1 880 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 SENP1Q9P0U3 644 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 CABP2Q9NPB3 220 aa13.76□□□□□ -0.21
COL6A3-203ENST00000353578 YIPF3Q9GZM5 350 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 SMARCA5O60264 1052 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-203ENST00000353578 DTNBO60941 627 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 ATICP31939 592 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 FSCBQ5H9T9 825 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 PSPC1Q8WXF1 523 aaKnown RBP13.75□□□□□ -0.21
COL6A3-203ENST00000353578 SLC24A3Q9HC58 644 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 STARD3NLO95772 234 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 USP40Q9NVE5 1235 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 GMEB1Q9Y692 573 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 SCG2P13521 617 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 MYO1EQ12965 1108 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 ABCF3Q9NUQ8 709 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 EPN1Q9Y6I3 576 aaPredicted RBP13.75□□□□□ -0.21
COL6A3-203ENST00000353578 DIAPH2O60879 1101 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 KRT10P13645 584 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 ATF2P15336 505 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 TTC25Q96NG3 672 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 VPS37BQ9H9H4 285 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 PCDHB15Q9Y5E8 787 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 ANO9A1A5B4 782 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 PSMD2Q13200 908 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 ATP6V0A1Q93050 837 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 HIC2Q96JB3 615 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 FAM8A1Q9UBU6 413 aa13.75□□□□□ -0.21
COL6A3-203ENST00000353578 KDM3AQ9Y4C1 1321 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 GUCY2FP51841 1108 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 STX3Q13277 289 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 CCDC125Q86Z20 511 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 SLC17A8Q8NDX2 589 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 CATSPER2Q96P56 530 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 CCDC78A2IDD5 438 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 CCDC15Q0P6D6 951 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 ZBTB40Q9NUA8 1239 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 TEX14Q8IWB6 1497 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 TRAF5O00463 557 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 PPP1R42Q7Z4L9 355 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 MYH11P35749 1972 aa13.74□□□□□ -0.21
COL6A3-203ENST00000353578 FANCD2Q9BXW9 1451 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms