RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CHUKO15111 745 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 RASSF9O75901 435 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 PARP1P09874 1014 aaKnown RBP7.6□□□□□ -1.19
VPS39-202ENST00000348544 ELF1P32519 619 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 SEC24CP53992 1094 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 ATP2B2Q01814 1243 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 FAM69CQ0P6D2 419 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 NNTQ13423 1086 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 PDXDC2PQ6P474 469 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 EHBP1Q8NDI1 1231 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 SPATA4Q8NEY3 305 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 ZNF473Q8WTR7 871 aaKnown RBP7.6□□□□□ -1.19
VPS39-202ENST00000348544 ZKSCAN3Q9BRR0 538 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 TTYH3Q9C0H2 523 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 EPN3Q9H201 632 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 VCPKMTQ9H867 229 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 EPB41L4AQ9HCS5 686 aaPredicted RBP7.6□□□□□ -1.19
VPS39-202ENST00000348544 PIH1D3Q9NQM4 214 aaKnown RBP7.6□□□□□ -1.19
VPS39-202ENST00000348544 KLC4Q9NSK0 619 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 AGPAT5Q9NUQ2 364 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 GDAQ9Y2T3 454 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 CAPN6Q9Y6Q1 641 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 FER1L4A9Z1Z3 1794 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 KIF1AQ12756 1690 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 ZNF233A6NK53 670 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 DEXIO95424 95 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 GCP02774 474 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 PRCPP42785 496 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 KLK7P49862 253 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 SMTNP53814 917 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 PMS1P54277 932 aaKnown RBP7.59□□□□□ -1.19
VPS39-202ENST00000348544 EPHB4P54760 987 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 KRT83P78385 493 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 HDLBPQ00341 1268 aaKnown RBP7.59□□□□□ -1.19
VPS39-202ENST00000348544 SETQ01105 290 aaPredicted RBP7.59□□□□□ -1.19
VPS39-202ENST00000348544 ACTN3Q08043 901 aaPredicted RBP7.59□□□□□ -1.19
VPS39-202ENST00000348544 NEDD9Q14511 834 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 RTN1Q16799 776 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 SPRED3Q2MJR0 410 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 ALS2CLQ60I27 953 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 KDM7AQ6ZMT4 941 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 YTHDF3Q7Z739 585 aaKnown RBP7.59□□□□□ -1.19
VPS39-202ENST00000348544 CCDC13Q8IYE1 715 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 TRIM22Q8IYM9 498 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 OSCARQ8IYS5 282 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 CAVIN3Q969G5 261 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 ZNF622Q969S3 477 aaKnown RBP eCLIP7.59□□□□□ -1.197e-7■■■□□ 14.8
VPS39-202ENST00000348544 EID1Q9Y6B2 187 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 NUP188Q5SRE5 1749 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 A0A1W2PQC6 194 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 PHKG2P15735 406 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 MATR3P43243 847 aaKnown RBP eCLIP7.59□□□□□ -1.19
VPS39-202ENST00000348544 ITIH3Q06033 890 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 SF3B2Q13435 895 aaKnown RBP7.59□□□□□ -1.19
VPS39-202ENST00000348544 TCIRG1Q13488 830 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 PTGISQ16647 500 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 CCDC40Q4G0X9 1142 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 WLSQ5T9L3 541 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 IQCEQ6IPM2 695 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 EMBQ6PCB8 327 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 KRT26Q7Z3Y9 468 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 FAM228AQ86W67 206 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 SPATS2Q86XZ4 545 aaKnown RBP7.59□□□□□ -1.19
VPS39-202ENST00000348544 FNBP4Q8N3X1 1017 aaPredicted RBP7.59□□□□□ -1.19
VPS39-202ENST00000348544 GIMAP7Q8NHV1 300 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 PIK3R5Q8WYR1 880 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 MIEF2Q96C03 454 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 TACO1Q9BSH4 297 aaKnown RBP7.59□□□□□ -1.19
VPS39-202ENST00000348544 NHEJ1Q9H9Q4 299 aaPredicted RBP7.59□□□□□ -1.19
VPS39-202ENST00000348544 STIM2Q9P246 746 aa7.59□□□□□ -1.19
VPS39-202ENST00000348544 PDS5AQ29RF7 1337 aaKnown RBP7.59□□□□□ -1.2
VPS39-202ENST00000348544 SPATA31A3Q5VYP0 1347 aa7.59□□□□□ -1.2
VPS39-202ENST00000348544 ZNF532Q9HCE3 1301 aa7.59□□□□□ -1.2
VPS39-202ENST00000348544 ABCC12Q96J65 1359 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 HSF2BPO75031 334 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 FAM153BP0C7A2 387 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 CXCR5P32302 372 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 FAM153CQ494X1 144 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 ZNF658Q5TYW1 1059 aaPredicted RBP7.58□□□□□ -1.2
VPS39-202ENST00000348544 EMC10Q5UCC4 262 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 NFRKBQ6P4R8 1299 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 C6orf89Q6UWU4 347 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 IQCKQ8N0W5 287 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 MYCBPAPQ8TBZ2 947 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 RUBCNQ92622 972 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 N4BP2L2Q92802 583 aaPredicted RBP7.58□□□□□ -1.2
VPS39-202ENST00000348544 CCDC85AQ96PX6 553 aaPredicted RBP7.58□□□□□ -1.2
VPS39-202ENST00000348544 PSMB7Q99436 277 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 MLXIPQ9HAP2 919 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 SLC40A1Q9NP59 571 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 LRWD1Q9UFC0 647 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 FAM153AQ9UHL3 310 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 RIC1Q4ADV7 1423 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 hCG_1642624A0A1W2PR95 340 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 TCRBV5S4A2TA0A5A2 114 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 ZSCAN5CA6NGD5 496 aaPredicted RBP7.58□□□□□ -1.2
VPS39-202ENST00000348544 PRDM1O75626 825 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 PPP1R37O75864 691 aa7.58□□□□□ -1.2
VPS39-202ENST00000348544 IDH1O75874 414 aaKnown RBP7.58□□□□□ -1.2
VPS39-202ENST00000348544 PLEKP08567 350 aaPredicted RBP7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms