RNA–Protein interactions for RNA: ENST00000347559.6

LMNA-201, Transcript of lamin A/C, humanhuman

TSL 5 BASIC

Gene LMNA, Length 3,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-201ENST00000347559 NAA25Q14CX7 972 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 RTN1Q16799 776 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 C8orf74Q6P047 294 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 AATFQ9NY61 560 aaKnown RBP eCLIP17.12■□□□□ 0.33
LMNA-201ENST00000347559 ZSWIM5Q9P217 1185 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 NFU1Q9UMS0 254 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 SNX12Q9UMY4 172 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 TMEM2Q9UHN6 1383 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 TSPOAP1O95153 1857 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 NWD2Q9ULI1 1742 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 BACH1O14867 736 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 KLK7P49862 253 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 NAIF1Q69YI7 327 aaPredicted RBP17.12■□□□□ 0.33
LMNA-201ENST00000347559 SH3RF1Q7Z6J0 888 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 MMGT1Q8N4V1 131 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 RWDD2AQ9UIY3 292 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 CAPN6Q9Y6Q1 641 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 MST1RQ04912 1400 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 ZSCAN5CA6NGD5 496 aaPredicted RBP17.12■□□□□ 0.33
LMNA-201ENST00000347559 A6NNZ2 444 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 ZPR1O75312 459 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 SKAP2O75563 359 aaPredicted RBP17.12■□□□□ 0.33
LMNA-201ENST00000347559 FAM153BP0C7A2 387 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 EPB41P11171 864 aaKnown RBP17.12■□□□□ 0.33
LMNA-201ENST00000347559 IFNAR1P17181 557 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 TUBB8Q3ZCM7 444 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 FAM153CQ494X1 144 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 EMBQ6PCB8 327 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 MAATS1Q7Z4T9 603 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 HAUS2Q9NVX0 235 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 FAM153AQ9UHL3 310 aa17.12■□□□□ 0.33
LMNA-201ENST00000347559 ANO9A1A5B4 782 aa17.11■□□□□ 0.33
LMNA-201ENST00000347559 PATL2C9JE40 543 aaKnown RBP17.11■□□□□ 0.33
LMNA-201ENST00000347559 NCK2O43639 380 aa17.11■□□□□ 0.33
LMNA-201ENST00000347559 PPP1R12BO60237 982 aaPredicted RBP17.11■□□□□ 0.33
LMNA-201ENST00000347559 RASSF9O75901 435 aa17.11■□□□□ 0.33
LMNA-201ENST00000347559 MOCS3O95396 460 aa17.11■□□□□ 0.33
LMNA-201ENST00000347559 EZRP15311 586 aaKnown RBP17.11■□□□□ 0.33
LMNA-201ENST00000347559 VAV2P52735 878 aa17.11■□□□□ 0.33
LMNA-201ENST00000347559 EARS2Q5JPH6 523 aaKnown RBP17.11■□□□□ 0.33
LMNA-201ENST00000347559 DNAJC7Q99615 494 aa17.11■□□□□ 0.33
LMNA-201ENST00000347559 TACO1Q9BSH4 297 aaKnown RBP17.11■□□□□ 0.33
LMNA-201ENST00000347559 RGPD8O14715 1765 aaPredicted RBP17.11■□□□□ 0.33
LMNA-201ENST00000347559 PARP9Q8IXQ6 854 aa17.11■□□□□ 0.33
LMNA-201ENST00000347559 ANKRD13CQ8N6S4 541 aa17.11■□□□□ 0.33
LMNA-201ENST00000347559 XDHP47989 1333 aa17.11■□□□□ 0.33
LMNA-201ENST00000347559 C4AP0C0L4 1744 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 C4BP0C0L5 1744 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 ZNF233A6NK53 670 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 B4DLN1 442 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 WNT7AO00755 349 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 CARSP49589 748 aaKnown RBP17.1■□□□□ 0.33
LMNA-201ENST00000347559 SPA17Q15506 151 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 HAUS3Q68CZ6 603 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 TEX11Q8IYF3 940 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 TTC5Q8N0Z6 440 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 FAXDC2Q96IV6 333 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 WDR17Q8IZU2 1322 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 TACC1O75410 805 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 PRDM1O75626 825 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 PRCPP42785 496 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 CYB5D1Q6P9G0 228 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 KDM7AQ6ZMT4 941 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 CAPN11Q9UMQ6 739 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 ATXN2Q99700 1313 aaKnown RBP17.1■□□□□ 0.33
LMNA-201ENST00000347559 DIP2BQ9P265 1576 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 GBP2P32456 591 aaPredicted RBP17.1■□□□□ 0.33
LMNA-201ENST00000347559 PAFAH1B1P43034 410 aa17.1■□□□□ 0.33
LMNA-201ENST00000347559 PPP1R12AO14974 1030 aaPredicted RBP17.09■□□□□ 0.33
LMNA-201ENST00000347559 PLEKP08567 350 aaPredicted RBP17.09■□□□□ 0.33
LMNA-201ENST00000347559 SF3A3Q12874 501 aaKnown RBP eCLIP17.09■□□□□ 0.33
LMNA-201ENST00000347559 SPRED3Q2MJR0 410 aa17.09■□□□□ 0.33
LMNA-201ENST00000347559 FNBP4Q8N3X1 1017 aaPredicted RBP17.09■□□□□ 0.33
LMNA-201ENST00000347559 CCDC42Q96M95 316 aa17.09■□□□□ 0.33
LMNA-201ENST00000347559 OSBPL9Q96SU4 736 aa17.09■□□□□ 0.33
LMNA-201ENST00000347559 UBAC1Q9BSL1 405 aa17.09■□□□□ 0.33
LMNA-201ENST00000347559 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.09■□□□□ 0.337e-7■■■□□ 15.7
LMNA-201ENST00000347559 RBM12Q9NTZ6 932 aaKnown RBP17.09■□□□□ 0.33
LMNA-201ENST00000347559 DEXIO95424 95 aa17.09■□□□□ 0.33
LMNA-201ENST00000347559 MDH1P40925 334 aaKnown RBP17.09■□□□□ 0.33
LMNA-201ENST00000347559 GUCY2DQ02846 1103 aa17.09■□□□□ 0.33
LMNA-201ENST00000347559 IRF2BP1Q8IU81 584 aa17.09■□□□□ 0.33
LMNA-201ENST00000347559 TRIM47Q96LD4 638 aa17.09■□□□□ 0.33
LMNA-201ENST00000347559 EPB41L5Q9HCM4 733 aa17.09■□□□□ 0.33
LMNA-201ENST00000347559 MAGEC2Q9UBF1 373 aaPredicted RBP17.09■□□□□ 0.33
LMNA-201ENST00000347559 LGALS16A8MUM7 142 aa17.08■□□□□ 0.33
LMNA-201ENST00000347559 YTHDF3Q7Z739 585 aaKnown RBP17.08■□□□□ 0.33
LMNA-201ENST00000347559 SGMS1Q86VZ5 419 aa17.08■□□□□ 0.33
LMNA-201ENST00000347559 TBC1D31Q96DN5 1066 aa17.08■□□□□ 0.33
LMNA-201ENST00000347559 MS4A14Q96JA4 679 aa17.08■□□□□ 0.33
LMNA-201ENST00000347559 TRIM6Q9C030 488 aaPredicted RBP17.08■□□□□ 0.33
LMNA-201ENST00000347559 TBC1D2BQ9UPU7 963 aa17.08■□□□□ 0.33
LMNA-201ENST00000347559 STK36Q9NRP7 1315 aa17.08■□□□□ 0.33
LMNA-201ENST00000347559 OPLAHO14841 1288 aa17.08■□□□□ 0.32
LMNA-201ENST00000347559 RNASE9P60153 205 aaKnown RBP17.08■□□□□ 0.32
LMNA-201ENST00000347559 TRIM58Q8NG06 486 aa17.08■□□□□ 0.32
LMNA-201ENST00000347559 NOC3LQ8WTT2 800 aaKnown RBP17.08■□□□□ 0.32
LMNA-201ENST00000347559 RBM33Q96EV2 1170 aaKnown RBP17.08■□□□□ 0.32
LMNA-201ENST00000347559 ZBTB3Q9H5J0 574 aa17.08■□□□□ 0.32
LMNA-201ENST00000347559 BCCIPQ9P287 314 aaKnown RBP eCLIP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms