RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 ECEL1O95672 775 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 TUBBP07437 444 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 IGHMBP2P38935 993 aaKnown RBP13.29□□□□□ -0.28
RTN3-203ENST00000341307 BCAMP50895 628 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 CHRNDQ07001 517 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 RASGRF1Q13972 1273 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 ANKRD1Q15327 319 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 ACCSLQ4AC99 568 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 CYB5D1Q6P9G0 228 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 KIAA1328Q86T90 577 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 COG1Q8WTW3 980 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 CRACR2AQ9BSW2 395 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 PAGR1Q9BTK6 254 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 RGPD3A6NKT7 1758 aaPredicted RBP13.28□□□□□ -0.28
RTN3-203ENST00000341307 RGPD4Q7Z3J3 1758 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 A0A0U1RQJ8 604 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 JAK2O60674 1132 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 RTN3O95197 1032 aaPredicted RBP13.28□□□□□ -0.28
RTN3-203ENST00000341307 FGAP02671 866 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 CCDC96Q2M329 555 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 TRAPPC3LQ5T215 181 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 ATRIPQ8WXE1 791 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 PSMD1Q99460 953 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 BATF3Q9NR55 127 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 ZNF232Q9UNY5 417 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 NEDD4P46934 1319 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 CNTNAP4Q9C0A0 1308 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 BCORQ6W2J9 1755 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 LAMA4Q16363 1823 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 ZEB2O60315 1214 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 ZFYP08048 801 aaPredicted RBP13.28□□□□□ -0.28
RTN3-203ENST00000341307 ADD2P35612 726 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 UBASH3AP57075 661 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 MIS18BP1Q6P0N0 1132 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 CLEC4GQ6UXB4 293 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 FUKQ8N0W3 1084 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 SPATA5Q8NB90 893 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 SCLT1Q96NL6 688 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 GPHNQ9NQX3 736 aaPredicted RBP13.28□□□□□ -0.28
RTN3-203ENST00000341307 CHCHD3Q9NX63 227 aaKnown RBP13.28□□□□□ -0.28
RTN3-203ENST00000341307 RCOR1Q9UKL0 485 aa13.28□□□□□ -0.28
RTN3-203ENST00000341307 ZNF532Q9HCE3 1301 aa13.27□□□□□ -0.28
RTN3-203ENST00000341307 ABCC12Q96J65 1359 aa13.27□□□□□ -0.28
RTN3-203ENST00000341307 STX10O60499 249 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 PYGBP11216 843 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 TOP1P11387 765 aaKnown RBP13.27□□□□□ -0.29
RTN3-203ENST00000341307 NEFHP12036 1026 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 SLC5A1P13866 664 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 CDR1P51861 262 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 DHX32Q7L7V1 743 aaKnown RBP13.27□□□□□ -0.29
RTN3-203ENST00000341307 ALDH8A1Q9H2A2 487 aaPredicted RBP13.27□□□□□ -0.29
RTN3-203ENST00000341307 CFAP45Q9UL16 551 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 DENND2AQ9ULE3 1009 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 MYO6Q9UM54 1294 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 CTAGE15A4D2H0 777 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 SSBP05455 408 aaKnown RBP eCLIP13.27□□□□□ -0.29
RTN3-203ENST00000341307 CTAGE8P0CG41 777 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 MAGEA8P43361 318 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 PDIA5Q14554 519 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 RC3H1Q5TC82 1133 aaKnown RBP13.27□□□□□ -0.29
RTN3-203ENST00000341307 CTAGE6Q86UF2 777 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 CTAGE4Q8IX94 777 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 ZNF512BQ96KM6 892 aaPredicted RBP13.27□□□□□ -0.29
RTN3-203ENST00000341307 GDAP1L1Q96MZ0 367 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.27□□□□□ -0.29
RTN3-203ENST00000341307 FANCLQ9NW38 375 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 KIAA1468Q9P260 1216 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 PCDHGA4Q9Y5G9 962 aa13.27□□□□□ -0.29
RTN3-203ENST00000341307 RFC4P35249 363 aa13.26□□□□□ -0.29
RTN3-203ENST00000341307 TBX2Q13207 712 aaPredicted RBP13.26□□□□□ -0.29
RTN3-203ENST00000341307 MTF1Q14872 753 aa13.26□□□□□ -0.29
RTN3-203ENST00000341307 FILIP1LQ4L180 1135 aa13.26□□□□□ -0.29
RTN3-203ENST00000341307 CAPRIN2Q6IMN6 1127 aaKnown RBP13.26□□□□□ -0.29
RTN3-203ENST00000341307 BZW1Q7L1Q6 419 aaKnown RBP13.26□□□□□ -0.29
RTN3-203ENST00000341307 NCAPG2Q86XI2 1143 aa13.26□□□□□ -0.29
RTN3-203ENST00000341307 CCDC50Q8IVM0 306 aa13.26□□□□□ -0.29
RTN3-203ENST00000341307 FSIP1Q8NA03 581 aa13.26□□□□□ -0.29
RTN3-203ENST00000341307 TCP11Q8WWU5 503 aa13.26□□□□□ -0.29
RTN3-203ENST00000341307 EZH1Q92800 747 aaPredicted RBP13.26□□□□□ -0.29
RTN3-203ENST00000341307 CELF1Q92879 486 aaKnown RBP13.26□□□□□ -0.29
RTN3-203ENST00000341307 FAM163AQ96GL9 167 aaPredicted RBP13.26□□□□□ -0.29
RTN3-203ENST00000341307 RSRC1Q96IZ7 334 aaKnown RBP13.26□□□□□ -0.29
RTN3-203ENST00000341307 G3BP2Q9UN86 482 aaKnown RBP13.26□□□□□ -0.29
RTN3-203ENST00000341307 BIN1O00499 593 aa13.26□□□□□ -0.29
RTN3-203ENST00000341307 SMNDC1O75940 238 aaKnown RBP eCLIP13.26□□□□□ -0.29
RTN3-203ENST00000341307 PDE6AP16499 860 aa13.26□□□□□ -0.29
RTN3-203ENST00000341307 EXOSC10Q01780 885 aaKnown RBP13.26□□□□□ -0.29
RTN3-203ENST00000341307 FMR1NBQ8N0W7 255 aaPredicted RBP13.26□□□□□ -0.29
RTN3-203ENST00000341307 TC2NQ8N9U0 490 aa13.26□□□□□ -0.29
RTN3-203ENST00000341307 NKX2-3Q8TAU0 364 aa13.26□□□□□ -0.29
RTN3-203ENST00000341307 HOOK2Q96ED9 719 aa13.26□□□□□ -0.29
RTN3-203ENST00000341307 LZTFL1Q9NQ48 299 aa13.26□□□□□ -0.29
RTN3-203ENST00000341307 INTS13Q9NVM9 706 aa13.26□□□□□ -0.29
RTN3-203ENST00000341307 UQCRFS1P1P0C7P4 283 aa13.25□□□□□ -0.29
RTN3-203ENST00000341307 CFAP100Q494V2 611 aa13.25□□□□□ -0.29
RTN3-203ENST00000341307 RNF187Q5TA31 235 aaPredicted RBP13.25□□□□□ -0.29
RTN3-203ENST00000341307 SLC51AQ86UW1 340 aa13.25□□□□□ -0.29
RTN3-203ENST00000341307 MAGEB6Q8N7X4 407 aa13.25□□□□□ -0.29
RTN3-203ENST00000341307 TBC1D5Q92609 795 aa13.25□□□□□ -0.29
RTN3-203ENST00000341307 NARFQ9UHQ1 456 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 549.5 ms