RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 NCAPG2Q86XI2 1143 aa18.64■□□□□ 0.57
CLN3-201ENST00000333496 MTMR7Q9Y216 660 aa18.64■□□□□ 0.57
CLN3-201ENST00000333496 IVNS1ABPQ9Y6Y0 642 aa18.64■□□□□ 0.57
CLN3-201ENST00000333496 HMGCRP04035 888 aa18.63■□□□□ 0.57
CLN3-201ENST00000333496 NT5C2P49902 561 aa18.63■□□□□ 0.57
CLN3-201ENST00000333496 STAT2P52630 851 aa18.63■□□□□ 0.57
CLN3-201ENST00000333496 APBA2Q99767 749 aa18.63■□□□□ 0.57
CLN3-201ENST00000333496 LSG1Q9H089 658 aaKnown RBP18.63■□□□□ 0.57
CLN3-201ENST00000333496 RNF208Q9H0X6 261 aa18.63■□□□□ 0.57
CLN3-201ENST00000333496 MROH8Q9H579 483 aa18.63■□□□□ 0.57
CLN3-201ENST00000333496 SLC38A10Q9HBR0 1119 aa18.63■□□□□ 0.57
CLN3-201ENST00000333496 RIPK3Q9Y572 518 aa18.63■□□□□ 0.57
CLN3-201ENST00000333496 U3KPZ7 1027 aaPredicted RBP18.63■□□□□ 0.57
CLN3-201ENST00000333496 STRNO43815 780 aa18.63■□□□□ 0.57
CLN3-201ENST00000333496 PLA2G6O60733 806 aa18.63■□□□□ 0.57
CLN3-201ENST00000333496 SLC25A27O95847 323 aa18.63■□□□□ 0.57
CLN3-201ENST00000333496 HOXC6P09630 235 aa18.63■□□□□ 0.57
CLN3-201ENST00000333496 NPLOC4Q8TAT6 608 aa18.63■□□□□ 0.57
CLN3-201ENST00000333496 KRT23Q9C075 422 aa18.63■□□□□ 0.57
CLN3-201ENST00000333496 CNNM2Q9H8M5 875 aa18.63■□□□□ 0.57
CLN3-201ENST00000333496 FLRT1Q9NZU1 646 aa18.63■□□□□ 0.57
CLN3-201ENST00000333496 RBM8AQ9Y5S9 174 aaKnown RBP18.63■□□□□ 0.57
CLN3-201ENST00000333496 ATP2A1O14983 1001 aa18.62■□□□□ 0.57
CLN3-201ENST00000333496 ADORA2AP29274 412 aa18.62■□□□□ 0.57
CLN3-201ENST00000333496 IQCA1Q86XH1 822 aa18.62■□□□□ 0.57
CLN3-201ENST00000333496 DGKHQ86XP1 1220 aa18.62■□□□□ 0.57
CLN3-201ENST00000333496 CHURC1Q8WUH1 139 aa18.62■□□□□ 0.57
CLN3-201ENST00000333496 DCAF4Q8WV16 495 aa18.62■□□□□ 0.57
CLN3-201ENST00000333496 COBLO75128 1261 aa18.61■□□□□ 0.57
CLN3-201ENST00000333496 GJB1P08034 283 aa18.61■□□□□ 0.57
CLN3-201ENST00000333496 PDHBP11177 359 aa18.61■□□□□ 0.57
CLN3-201ENST00000333496 MAP3K21Q5TCX8 1036 aa18.61■□□□□ 0.57
CLN3-201ENST00000333496 TTBK2Q6IQ55 1244 aa18.61■□□□□ 0.57
CLN3-201ENST00000333496 STOX1Q6ZVD7 989 aa18.61■□□□□ 0.57
CLN3-201ENST00000333496 CYB5R4Q7L1T6 521 aa18.61■□□□□ 0.57
CLN3-201ENST00000333496 FAM160B2Q86V87 743 aa18.61■□□□□ 0.57
CLN3-201ENST00000333496 CPXCR1Q8N123 301 aa18.61■□□□□ 0.57
CLN3-201ENST00000333496 ENAHQ8N8S7 591 aaPredicted RBP18.61■□□□□ 0.57
CLN3-201ENST00000333496 ANKS1AQ92625 1134 aa18.61■□□□□ 0.57
CLN3-201ENST00000333496 SHISA4Q96DD7 197 aa18.61■□□□□ 0.57
CLN3-201ENST00000333496 ZSCAN10Q96SZ4 725 aaPredicted RBP18.61■□□□□ 0.57
CLN3-201ENST00000333496 TEX13BQ9BXU2 312 aa18.61■□□□□ 0.57
CLN3-201ENST00000333496 RAVER2Q9HCJ3 691 aaKnown RBP18.61■□□□□ 0.57
CLN3-201ENST00000333496 PAK6Q9NQU5 681 aaPredicted RBP18.61■□□□□ 0.57
CLN3-201ENST00000333496 ISY1Q9ULR0 285 aaKnown RBP18.61■□□□□ 0.57
CLN3-201ENST00000333496 E7EWF7 191 aa18.6■□□□□ 0.57
CLN3-201ENST00000333496 ZBED4O75132 1171 aa18.6■□□□□ 0.57
CLN3-201ENST00000333496 IGHA2P01877 340 aa18.6■□□□□ 0.57
CLN3-201ENST00000333496 SNHG28P0DPA3 235 aa18.6■□□□□ 0.57
CLN3-201ENST00000333496 ZKSCAN1P17029 563 aaPredicted RBP18.6■□□□□ 0.57
CLN3-201ENST00000333496 SNRNP48Q6IEG0 339 aaKnown RBP18.6■□□□□ 0.57
CLN3-201ENST00000333496 TRMT44Q8IYL2 757 aaKnown RBP18.6■□□□□ 0.57
CLN3-201ENST00000333496 ABRAQ8N0Z2 381 aa18.6■□□□□ 0.57
CLN3-201ENST00000333496 FRMPD3Q5JV73 1810 aa18.6■□□□□ 0.57
CLN3-201ENST00000333496 ZNF536O15090 1300 aa18.6■□□□□ 0.57
CLN3-201ENST00000333496 TNKSO95271 1327 aa18.6■□□□□ 0.57
CLN3-201ENST00000333496 FRMPD2Q68DX3 1309 aaPredicted RBP18.6■□□□□ 0.57
CLN3-201ENST00000333496 GJA8P48165 433 aa18.6■□□□□ 0.57
CLN3-201ENST00000333496 CACNB2Q08289 660 aaPredicted RBP18.6■□□□□ 0.57
CLN3-201ENST00000333496 IKQ13123 557 aaPredicted RBP18.6■□□□□ 0.57
CLN3-201ENST00000333496 CCDC96Q2M329 555 aa18.6■□□□□ 0.57
CLN3-201ENST00000333496 BTNL9Q6UXG8 535 aa18.6■□□□□ 0.57
CLN3-201ENST00000333496 KIAA1211Q6ZU35 1233 aa18.6■□□□□ 0.57
CLN3-201ENST00000333496 DPP9Q86TI2 863 aa18.6■□□□□ 0.57
CLN3-201ENST00000333496 PRR12Q9ULL5 1215 aa18.6■□□□□ 0.57
CLN3-201ENST00000333496 MYH6P13533 1939 aa18.59■□□□□ 0.57
CLN3-201ENST00000333496 RPTORQ8N122 1335 aa18.59■□□□□ 0.57
CLN3-201ENST00000333496 FDX1P10109 184 aa18.59■□□□□ 0.57
CLN3-201ENST00000333496 FCER1AP12319 257 aa18.59■□□□□ 0.57
CLN3-201ENST00000333496 PRKAR2AP13861 404 aaKnown RBP18.59■□□□□ 0.57
CLN3-201ENST00000333496 OAZ1P54368 228 aa18.59■□□□□ 0.57
CLN3-201ENST00000333496 SEC23AQ15436 765 aa18.59■□□□□ 0.57
CLN3-201ENST00000333496 CCDC178Q5BJE1 867 aa18.59■□□□□ 0.57
CLN3-201ENST00000333496 CDC45O75419 566 aa18.58■□□□□ 0.56
CLN3-201ENST00000333496 COPB2P35606 906 aa18.58■□□□□ 0.56
CLN3-201ENST00000333496 SLC16A2P36021 539 aa18.58■□□□□ 0.56
CLN3-201ENST00000333496 SNAP25P60880 206 aa18.58■□□□□ 0.56
CLN3-201ENST00000333496 ZNF543Q08ER8 600 aa18.58■□□□□ 0.56
CLN3-201ENST00000333496 PNMA1Q8ND90 353 aa18.58■□□□□ 0.56
CLN3-201ENST00000333496 U2AF1L4Q8WU68 220 aaKnown RBP18.58■□□□□ 0.56
CLN3-201ENST00000333496 DEFB118Q96PH6 123 aa18.58■□□□□ 0.56
CLN3-201ENST00000333496 MMP19Q99542 508 aa18.58■□□□□ 0.56
CLN3-201ENST00000333496 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.58■□□□□ 0.56
CLN3-201ENST00000333496 HMX1Q9NP08 348 aaPredicted RBP18.58■□□□□ 0.56
CLN3-201ENST00000333496 GPCPD1Q9NPB8 672 aa18.58■□□□□ 0.56
CLN3-201ENST00000333496 ANO2Q9NQ90 1003 aa18.58■□□□□ 0.56
CLN3-201ENST00000333496 CTDP1Q9Y5B0 961 aaPredicted RBP18.58■□□□□ 0.56
CLN3-201ENST00000333496 MCM3APO60318 1980 aa18.57■□□□□ 0.56
CLN3-201ENST00000333496 SGPL1O95470 568 aa18.57■□□□□ 0.56
CLN3-201ENST00000333496 SLC4A3P48751 1232 aa18.57■□□□□ 0.56
CLN3-201ENST00000333496 TRDNQ13061 729 aa18.57■□□□□ 0.56
CLN3-201ENST00000333496 NECTIN1Q15223 517 aa18.57■□□□□ 0.56
CLN3-201ENST00000333496 AGBL1Q96MI9 1066 aa18.57■□□□□ 0.56
CLN3-201ENST00000333496 PGK2P07205 417 aa18.56■□□□□ 0.56
CLN3-201ENST00000333496 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.56■□□□□ 0.56
CLN3-201ENST00000333496 NCOA7Q8NI08 942 aa18.56■□□□□ 0.56
CLN3-201ENST00000333496 UBAC1Q9BSL1 405 aa18.56■□□□□ 0.56
CLN3-201ENST00000333496 KAT14Q9H8E8 782 aa18.56■□□□□ 0.56
CLN3-201ENST00000333496 LCTP09848 1927 aa18.56■□□□□ 0.56
CLN3-201ENST00000333496 SLC27A2O14975 620 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms