RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 CAPN6Q9Y6Q1 641 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 WDR19Q8NEZ3 1342 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 TRIM75PA6NK02 468 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 GOLGA8KD6RF30 607 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 NCK2O43639 380 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 PARP1P09874 1014 aaKnown RBP15.04■□□□□ -0
CCDC88C-201ENST00000331194 HDLBPQ00341 1268 aaKnown RBP15.04■□□□□ -0
CCDC88C-201ENST00000331194 RTN1Q16799 776 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 NAA35Q5VZE5 725 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 AATFQ9NY61 560 aaKnown RBP eCLIP15.04■□□□□ -0
CCDC88C-201ENST00000331194 MYO5AQ9Y4I1 1855 aaKnown RBP15.04■□□□□ -0
CCDC88C-201ENST00000331194 ZNF532Q9HCE3 1301 aa15.04■□□□□ -0
CCDC88C-201ENST00000331194 SMIM22K7EJ46 135 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 BACH1O14867 736 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 SEMA3EO15041 775 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 DNA2P51530 1060 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 PPP2R5AQ15172 486 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 TOM1L2Q6ZVM7 507 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 SGMS1Q86VZ5 419 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 TRIM22Q8IYM9 498 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 MB21D1Q8N884 522 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 TMEM87BQ96K49 555 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 RUFY1Q96T51 708 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 LRWD1Q9UFC0 647 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 MAP3K15Q6ZN16 1313 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 ZNF263O14978 683 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 KRT86O43790 486 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 PDHBP11177 359 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 LSP1P33241 339 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 ADD2P35612 726 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 SPRED3Q2MJR0 410 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 CEP57Q86XR8 500 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 SYNE4Q8N205 404 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 CRACR2BQ8N4Y2 399 aaPredicted RBP15.03■□□□□ -0
CCDC88C-201ENST00000331194 SPATA4Q8NEY3 305 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 N4BP2L2Q92802 583 aaPredicted RBP15.03■□□□□ -0
CCDC88C-201ENST00000331194 NHEJ1Q9H9Q4 299 aaPredicted RBP15.03■□□□□ -0
CCDC88C-201ENST00000331194 B4DLN1 442 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 NAP1L1P55209 391 aaKnown RBP15.03■□□□□ -0
CCDC88C-201ENST00000331194 SF3B2Q13435 895 aaKnown RBP15.03■□□□□ -0
CCDC88C-201ENST00000331194 TRADDQ15628 312 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 ANKRD13CQ8N6S4 541 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 RNF217Q8TC41 542 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 KLC4Q9NSK0 619 aa15.03■□□□□ -0
CCDC88C-201ENST00000331194 ZNF330Q9Y3S2 320 aaPredicted RBP15.03■□□□□ -0
CCDC88C-201ENST00000331194 FSBPO95073 299 aa15.02■□□□□ -0
CCDC88C-201ENST00000331194 TSR1Q2NL82 804 aaKnown RBP15.02■□□□□ -0
CCDC88C-201ENST00000331194 CCDC57Q2TAC2 916 aa15.02■□□□□ -0
CCDC88C-201ENST00000331194 MS4A14Q96JA4 679 aa15.02■□□□□ -0
CCDC88C-201ENST00000331194 EP400Q96L91 3159 aa15.02□□□□□ -0.01
CCDC88C-201ENST00000331194 RASSF10A6NK89 507 aa15.02□□□□□ -0.01
CCDC88C-201ENST00000331194 PRKAB2O43741 272 aa15.02□□□□□ -0.01
CCDC88C-201ENST00000331194 OPA1O60313 960 aa15.02□□□□□ -0.01
CCDC88C-201ENST00000331194 MOCS3O95396 460 aa15.02□□□□□ -0.01
CCDC88C-201ENST00000331194 GUCY2FP51841 1108 aa15.02□□□□□ -0.01
CCDC88C-201ENST00000331194 B4GALNT4Q76KP1 1039 aa15.02□□□□□ -0.01
CCDC88C-201ENST00000331194 ZNF473Q8WTR7 871 aaKnown RBP15.02□□□□□ -0.01
CCDC88C-201ENST00000331194 IFT81Q8WYA0 676 aa15.02□□□□□ -0.01
CCDC88C-201ENST00000331194 CCDC43Q96MW1 224 aaKnown RBP15.02□□□□□ -0.01
CCDC88C-201ENST00000331194 DNAJC7Q99615 494 aa15.02□□□□□ -0.01
CCDC88C-201ENST00000331194 EPB41L4AQ9HCS5 686 aaPredicted RBP15.02□□□□□ -0.01
CCDC88C-201ENST00000331194 RWDD2AQ9UIY3 292 aa15.02□□□□□ -0.01
CCDC88C-201ENST00000331194 CEP131Q9UPN4 1083 aa15.02□□□□□ -0.01
CCDC88C-201ENST00000331194 KDM6AO15550 1401 aaPredicted RBP15.02□□□□□ -0.01
CCDC88C-201ENST00000331194 ZNF233A6NK53 670 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 HSF2BPO75031 334 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 ATP2C2O75185 946 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 RDXP35241 583 aaKnown RBP15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 AMOTL1Q8IY63 956 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 CCDC13Q8IYE1 715 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 RPGRIP1Q96KN7 1286 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 PLIN2Q99541 437 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 DDX60Q8IY21 1712 aaKnown RBP15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 CARSP49589 748 aaKnown RBP15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 SKOR1P84550 965 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 PTGDRQ13258 359 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 CCDC96Q2M329 555 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 NFU1Q9UMS0 254 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 LMTK3Q96Q04 1460 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 CCDC189A1A4V9 331 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 ADAMTS3O15072 1205 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 ELF1P32519 619 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 E2F5Q15329 346 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 HAUS3Q68CZ6 603 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 WASF1Q92558 559 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 PCMTD1Q96MG8 357 aaPredicted RBP15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 CCT8L2Q96SF2 557 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 PPANQ9NQ55 473 aaKnown RBP15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 MCM8Q9UJA3 840 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 SNX12Q9UMY4 172 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 NFAT5O94916 1531 aa15.01□□□□□ -0.01
CCDC88C-201ENST00000331194 KIF1CO43896 1103 aaKnown RBP15□□□□□ -0.01
CCDC88C-201ENST00000331194 TRIM21P19474 475 aaKnown RBP15□□□□□ -0.01
CCDC88C-201ENST00000331194 PAX7P23759 505 aa15□□□□□ -0.01
CCDC88C-201ENST00000331194 HPDP32754 393 aaPredicted RBP15□□□□□ -0.01
CCDC88C-201ENST00000331194 SF3A3Q12874 501 aaKnown RBP eCLIP15□□□□□ -0.01
CCDC88C-201ENST00000331194 CCDC40Q4G0X9 1142 aa15□□□□□ -0.01
CCDC88C-201ENST00000331194 RBM12Q9NTZ6 932 aaKnown RBP15□□□□□ -0.01
CCDC88C-201ENST00000331194 CAPN11Q9UMQ6 739 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms