RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 LEKR1Q6ZMV7 388 aa21.49■■□□□ 1.03
RTN4-201ENST00000317610 CCDC148Q8NFR7 591 aa21.49■■□□□ 1.03
RTN4-201ENST00000317610 LRRIQ3A6PVS8 624 aaPredicted RBP21.49■■□□□ 1.03
RTN4-201ENST00000317610 MCM7P33993 719 aa21.49■■□□□ 1.03
RTN4-201ENST00000317610 PFKFB3Q16875 520 aaPredicted RBP21.49■■□□□ 1.03
RTN4-201ENST00000317610 CTCFLQ8NI51 663 aaPredicted RBP21.49■■□□□ 1.03
RTN4-201ENST00000317610 ABCF2Q9UG63 623 aa21.49■■□□□ 1.03
RTN4-201ENST00000317610 CAPN11Q9UMQ6 739 aa21.49■■□□□ 1.03
RTN4-201ENST00000317610 ORC4O43929 436 aa21.48■■□□□ 1.03
RTN4-201ENST00000317610 EEF1GP26641 437 aaKnown RBP21.48■■□□□ 1.03
RTN4-201ENST00000317610 AARSP49588 968 aaKnown RBP eCLIP21.48■■□□□ 1.035e-8■■■□□ 16.6
RTN4-201ENST00000317610 NLRP5P59047 1200 aa21.48■■□□□ 1.03
RTN4-201ENST00000317610 PARP10Q53GL7 1025 aa21.48■■□□□ 1.03
RTN4-201ENST00000317610 PAPD7Q5XG87 772 aaKnown RBP21.48■■□□□ 1.03
RTN4-201ENST00000317610 CTR9Q6PD62 1173 aa21.48■■□□□ 1.03
RTN4-201ENST00000317610 TRIM10Q9UDY6 481 aa21.48■■□□□ 1.03
RTN4-201ENST00000317610 GUCA1BQ9UMX6 200 aa21.48■■□□□ 1.03
RTN4-201ENST00000317610 LAMB1P07942 1786 aa21.48■■□□□ 1.03
RTN4-201ENST00000317610 PDS5AQ29RF7 1337 aaKnown RBP21.48■■□□□ 1.03
RTN4-201ENST00000317610 HERVK_113P62684 666 aa21.47■■□□□ 1.03
RTN4-201ENST00000317610 SEMA3FQ13275 785 aa21.47■■□□□ 1.03
RTN4-201ENST00000317610 HSP90B2PQ58FF3 399 aa21.47■■□□□ 1.03
RTN4-201ENST00000317610 SRLQ86TD4 932 aa21.47■■□□□ 1.03
RTN4-201ENST00000317610 COL4A1P02462 1669 aa21.47■■□□□ 1.03
RTN4-201ENST00000317610 SCN7AQ01118 1682 aa21.47■■□□□ 1.03
RTN4-201ENST00000317610 MCM3P25205 808 aa21.47■■□□□ 1.03
RTN4-201ENST00000317610 DYNLL1P63167 89 aaKnown RBP21.47■■□□□ 1.03
RTN4-201ENST00000317610 KCNB1Q14721 858 aa21.47■■□□□ 1.03
RTN4-201ENST00000317610 WDR59Q6PJI9 974 aa21.47■■□□□ 1.03
RTN4-201ENST00000317610 THAP9Q9H5L6 903 aa21.47■■□□□ 1.03
RTN4-201ENST00000317610 LUC7L2Q9Y383 392 aaKnown RBP21.47■■□□□ 1.03
RTN4-201ENST00000317610 MYO1CO00159 1063 aa21.46■■□□□ 1.03
RTN4-201ENST00000317610 MEA1Q16626 185 aa21.46■■□□□ 1.03
RTN4-201ENST00000317610 GNL3LQ9NVN8 582 aaKnown RBP21.46■■□□□ 1.03
RTN4-201ENST00000317610 TARSL2A2RTX5 802 aaKnown RBP21.46■■□□□ 1.03
RTN4-201ENST00000317610 ADAMTS3O15072 1205 aa21.46■■□□□ 1.03
RTN4-201ENST00000317610 STAT6P42226 847 aa21.46■■□□□ 1.03
RTN4-201ENST00000317610 RPGRIP1Q96KN7 1286 aa21.46■■□□□ 1.03
RTN4-201ENST00000317610 DISC1Q9NRI5 854 aa21.46■■□□□ 1.03
RTN4-201ENST00000317610 LCMT1Q9UIC8 334 aa21.46■■□□□ 1.03
RTN4-201ENST00000317610 NTSR2O95665 410 aa21.45■■□□□ 1.02
RTN4-201ENST00000317610 ZNF384Q8TF68 577 aa21.45■■□□□ 1.02
RTN4-201ENST00000317610 CCDC102AQ96A19 550 aa21.45■■□□□ 1.02
RTN4-201ENST00000317610 SAR1BQ9Y6B6 198 aa21.45■■□□□ 1.02
RTN4-201ENST00000317610 TRIM49BA6NDI0 452 aa21.45■■□□□ 1.02
RTN4-201ENST00000317610 MYL1P05976 194 aa21.45■■□□□ 1.02
RTN4-201ENST00000317610 CALML3P27482 149 aa21.45■■□□□ 1.02
RTN4-201ENST00000317610 NAALADL2Q58DX5 795 aa21.45■■□□□ 1.02
RTN4-201ENST00000317610 EHBP1Q8NDI1 1231 aa21.45■■□□□ 1.02
RTN4-201ENST00000317610 MAPK8IP1Q9UQF2 711 aa21.45■■□□□ 1.02
RTN4-201ENST00000317610 ATP1A1P05023 1023 aaKnown RBP21.44■■□□□ 1.02
RTN4-201ENST00000317610 PMS1P54277 932 aaKnown RBP21.44■■□□□ 1.02
RTN4-201ENST00000317610 KRT83P78385 493 aa21.44■■□□□ 1.02
RTN4-201ENST00000317610 INTS5Q6P9B9 1019 aaKnown RBP21.44■■□□□ 1.02
RTN4-201ENST00000317610 RASSF4Q9H2L5 321 aa21.44■■□□□ 1.02
RTN4-201ENST00000317610 RRP15Q9Y3B9 282 aaKnown RBP21.44■■□□□ 1.02
RTN4-201ENST00000317610 KLRC4O43908 158 aa21.44■■□□□ 1.02
RTN4-201ENST00000317610 CAMTA2O94983 1202 aa21.44■■□□□ 1.02
RTN4-201ENST00000317610 GYG1P46976 350 aa21.44■■□□□ 1.02
RTN4-201ENST00000317610 MAP9Q49MG5 647 aa21.44■■□□□ 1.02
RTN4-201ENST00000317610 NOC3LQ8WTT2 800 aaKnown RBP21.44■■□□□ 1.02
RTN4-201ENST00000317610 MMS19Q96T76 1030 aa21.44■■□□□ 1.02
RTN4-201ENST00000317610 TTYH3Q9C0H2 523 aa21.44■■□□□ 1.02
RTN4-201ENST00000317610 HDAC6Q9UBN7 1215 aa21.44■■□□□ 1.02
RTN4-201ENST00000317610 USP17L12C9JPN9 530 aa21.43■■□□□ 1.02
RTN4-201ENST00000317610 USP17L21D6R901 530 aa21.43■■□□□ 1.02
RTN4-201ENST00000317610 SRGNP10124 158 aa21.43■■□□□ 1.02
RTN4-201ENST00000317610 VEGFAP15692 232 aaPredicted RBP21.43■■□□□ 1.02
RTN4-201ENST00000317610 DNM2P50570 870 aa21.43■■□□□ 1.02
RTN4-201ENST00000317610 CKAP4Q07065 602 aaKnown RBP21.43■■□□□ 1.02
RTN4-201ENST00000317610 CCDC122Q5T0U0 273 aa21.43■■□□□ 1.02
RTN4-201ENST00000317610 SH3GLB2Q9NR46 395 aa21.43■■□□□ 1.02
RTN4-201ENST00000317610 MKRN1Q9UHC7 482 aaKnown RBP21.43■■□□□ 1.02
RTN4-201ENST00000317610 BAZ2BQ9UIF8 2168 aaKnown RBP21.43■■□□□ 1.02
RTN4-201ENST00000317610 RHOBTB3O94955 611 aa21.43■■□□□ 1.02
RTN4-201ENST00000317610 SYF2O95926 243 aaKnown RBP21.43■■□□□ 1.02
RTN4-201ENST00000317610 UBE4AQ14139 1066 aa21.43■■□□□ 1.02
RTN4-201ENST00000317610 TSR1Q2NL82 804 aaKnown RBP21.43■■□□□ 1.02
RTN4-201ENST00000317610 TMED8Q6PL24 325 aaPredicted RBP21.43■■□□□ 1.02
RTN4-201ENST00000317610 BLIDQ8IZY5 108 aa21.43■■□□□ 1.02
RTN4-201ENST00000317610 ZC3H4Q9UPT8 1303 aaKnown RBP21.42■■□□□ 1.02
RTN4-201ENST00000317610 KIAA1551Q9HCM1 1747 aa21.42■■□□□ 1.02
RTN4-201ENST00000317610 ENC1O14682 589 aa21.42■■□□□ 1.02
RTN4-201ENST00000317610 NMT2O60551 498 aa21.42■■□□□ 1.02
RTN4-201ENST00000317610 PRPF6O94906 941 aaKnown RBP21.42■■□□□ 1.02
RTN4-201ENST00000317610 TTI2Q6NXR4 508 aa21.42■■□□□ 1.02
RTN4-201ENST00000317610 GIMAP8Q8ND71 665 aaPredicted RBP21.42■■□□□ 1.02
RTN4-201ENST00000317610 FAM205AQ6ZU69 1335 aa21.42■■□□□ 1.02
RTN4-201ENST00000317610 RETREG2Q8NC44 543 aa21.41■■□□□ 1.02
RTN4-201ENST00000317610 PURBQ96QR8 312 aaKnown RBP21.41■■□□□ 1.02
RTN4-201ENST00000317610 NUP58Q9BVL2 599 aa21.41■■□□□ 1.02
RTN4-201ENST00000317610 CCDC87Q9NVE4 849 aa21.41■■□□□ 1.02
RTN4-201ENST00000317610 KBTBD4Q9NVX7 518 aa21.41■■□□□ 1.02
RTN4-201ENST00000317610 SLAIN2Q9P270 581 aa21.41■■□□□ 1.02
RTN4-201ENST00000317610 HPCAL4Q9UM19 191 aa21.41■■□□□ 1.02
RTN4-201ENST00000317610 KAT6BQ8WYB5 2073 aa21.41■■□□□ 1.02
RTN4-201ENST00000317610 ANO9A1A5B4 782 aa21.41■■□□□ 1.02
RTN4-201ENST00000317610 M0R2N6 131 aa21.41■■□□□ 1.02
RTN4-201ENST00000317610 PSMA7O14818 248 aa21.41■■□□□ 1.02
RTN4-201ENST00000317610 KRT86O43790 486 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms