RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 FOSL2P15408 326 aa17.7■□□□□ 0.42
CCDC88B-201ENST00000301897 SBK1Q52WX2 424 aa17.7■□□□□ 0.42
CCDC88B-201ENST00000301897 MAMDC4Q6UXC1 1216 aa17.7■□□□□ 0.42
CCDC88B-201ENST00000301897 SIRT2Q8IXJ6 389 aa17.7■□□□□ 0.42
CCDC88B-201ENST00000301897 PRPF38AQ8NAV1 312 aaKnown RBP17.7■□□□□ 0.42
CCDC88B-201ENST00000301897 TTYH1Q9H313 450 aaPredicted RBP17.7■□□□□ 0.42
CCDC88B-201ENST00000301897 ZNF287Q9HBT7 754 aa17.7■□□□□ 0.42
CCDC88B-201ENST00000301897 STARD7Q9NQZ5 370 aa17.7■□□□□ 0.42
CCDC88B-201ENST00000301897 CTDP1Q9Y5B0 961 aaPredicted RBP17.7■□□□□ 0.42
CCDC88B-201ENST00000301897 GREB1LQ9C091 1923 aaPredicted RBP17.7■□□□□ 0.42
CCDC88B-201ENST00000301897 ATP2A1O14983 1001 aa17.69■□□□□ 0.42
CCDC88B-201ENST00000301897 ADAMTS4O75173 837 aa17.69■□□□□ 0.42
CCDC88B-201ENST00000301897 TAL1P17542 331 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-201ENST00000301897 ACLYP53396 1101 aa17.69■□□□□ 0.42
CCDC88B-201ENST00000301897 SLFNL1Q499Z3 407 aa17.69■□□□□ 0.42
CCDC88B-201ENST00000301897 SNRNP48Q6IEG0 339 aaKnown RBP17.69■□□□□ 0.42
CCDC88B-201ENST00000301897 CCDC174Q6PII3 467 aa17.69■□□□□ 0.42
CCDC88B-201ENST00000301897 ZNF467Q7Z7K2 595 aaPredicted RBP17.69■□□□□ 0.42
CCDC88B-201ENST00000301897 MIER1Q8N108 512 aa17.69■□□□□ 0.42
CCDC88B-201ENST00000301897 MYLIPQ8WY64 445 aa17.69■□□□□ 0.42
CCDC88B-201ENST00000301897 MKNK2Q9HBH9 465 aa17.69■□□□□ 0.42
CCDC88B-201ENST00000301897 SPC25Q9HBM1 224 aa17.69■□□□□ 0.42
CCDC88B-201ENST00000301897 SYNRGQ9UMZ2 1314 aa17.69■□□□□ 0.42
CCDC88B-201ENST00000301897 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.68■□□□□ 0.42
CCDC88B-201ENST00000301897 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.68■□□□□ 0.42
CCDC88B-201ENST00000301897 ZBED4O75132 1171 aa17.68■□□□□ 0.42
CCDC88B-201ENST00000301897 DUSP11O75319 330 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-201ENST00000301897 ITGB8P26012 769 aa17.68■□□□□ 0.42
CCDC88B-201ENST00000301897 CST5P28325 142 aaPredicted RBP17.68■□□□□ 0.42
CCDC88B-201ENST00000301897 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.68■□□□□ 0.42
CCDC88B-201ENST00000301897 PCSK9Q8NBP7 692 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-201ENST00000301897 SYMPKQ92797 1274 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-201ENST00000301897 LRRCC1Q9C099 1032 aa17.68■□□□□ 0.42
CCDC88B-201ENST00000301897 PUS7LQ9H0K6 701 aaKnown RBP17.68■□□□□ 0.42
CCDC88B-201ENST00000301897 FBXO40Q9UH90 709 aa17.68■□□□□ 0.42
CCDC88B-201ENST00000301897 SYNPO2Q9UMS6 1093 aa17.68■□□□□ 0.42
CCDC88B-201ENST00000301897 ELP1O95163 1332 aa17.68■□□□□ 0.42
CCDC88B-201ENST00000301897 SPTBN5Q9NRC6 3674 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-201ENST00000301897 DNAJC25-GNG10A0A024R161 153 aa17.67■□□□□ 0.42
CCDC88B-201ENST00000301897 F5H6K3 240 aa17.67■□□□□ 0.42
CCDC88B-201ENST00000301897 SMIM22K7EJ46 135 aa17.67■□□□□ 0.42
CCDC88B-201ENST00000301897 RASA1P20936 1047 aa17.67■□□□□ 0.42
CCDC88B-201ENST00000301897 KLRC3Q07444 240 aa17.67■□□□□ 0.42
CCDC88B-201ENST00000301897 FAAP100Q0VG06 881 aa17.67■□□□□ 0.42
CCDC88B-201ENST00000301897 KCNA10Q16322 511 aa17.67■□□□□ 0.42
CCDC88B-201ENST00000301897 KLHDC9Q8NEP7 349 aa17.67■□□□□ 0.42
CCDC88B-201ENST00000301897 GLT1D1Q96MS3 346 aa17.67■□□□□ 0.42
CCDC88B-201ENST00000301897 STRBPQ96SI9 672 aaKnown RBP17.67■□□□□ 0.42
CCDC88B-201ENST00000301897 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.67■□□□□ 0.42
CCDC88B-201ENST00000301897 COG6Q9Y2V7 657 aa17.67■□□□□ 0.42
CCDC88B-201ENST00000301897 NDUFB10O96000 172 aa17.66■□□□□ 0.42
CCDC88B-201ENST00000301897 TIMP1P01033 207 aa17.66■□□□□ 0.42
CCDC88B-201ENST00000301897 PPIGQ13427 754 aaKnown RBP eCLIP17.66■□□□□ 0.42
CCDC88B-201ENST00000301897 ABHD16BQ9H3Z7 469 aa17.66■□□□□ 0.42
CCDC88B-201ENST00000301897 FEM1BQ9UK73 627 aa17.66■□□□□ 0.42
CCDC88B-201ENST00000301897 ZHX1Q9UKY1 873 aaPredicted RBP17.66■□□□□ 0.42
CCDC88B-201ENST00000301897 MYH4Q9Y623 1939 aa17.66■□□□□ 0.42
CCDC88B-201ENST00000301897 MYO9BQ13459 2157 aa17.66■□□□□ 0.42
CCDC88B-201ENST00000301897 SNAI1O95863 264 aaPredicted RBP17.65■□□□□ 0.42
CCDC88B-201ENST00000301897 FDX1P10109 184 aa17.65■□□□□ 0.42
CCDC88B-201ENST00000301897 GNAT2P19087 354 aa17.65■□□□□ 0.42
CCDC88B-201ENST00000301897 DNAJB2P25686 324 aa17.65■□□□□ 0.42
CCDC88B-201ENST00000301897 OAZ1P54368 228 aa17.65■□□□□ 0.42
CCDC88B-201ENST00000301897 EPHB4P54760 987 aa17.65■□□□□ 0.42
CCDC88B-201ENST00000301897 ACVR2BQ13705 512 aa17.65■□□□□ 0.42
CCDC88B-201ENST00000301897 CCSAPQ6IQ19 270 aaPredicted RBP17.65■□□□□ 0.42
CCDC88B-201ENST00000301897 CHST13Q8NET6 341 aa17.65■□□□□ 0.42
CCDC88B-201ENST00000301897 LENG1Q96BZ8 264 aaPredicted RBP17.65■□□□□ 0.42
CCDC88B-201ENST00000301897 GPATCH3Q96I76 525 aa17.65■□□□□ 0.42
CCDC88B-201ENST00000301897 NUP88Q99567 741 aaPredicted RBP17.65■□□□□ 0.42
CCDC88B-201ENST00000301897 NCOR1O75376 2440 aa17.64■□□□□ 0.42
CCDC88B-201ENST00000301897 GSG1L2A8MUP6 293 aa17.64■□□□□ 0.41
CCDC88B-201ENST00000301897 ZFYP08048 801 aaPredicted RBP17.64■□□□□ 0.41
CCDC88B-201ENST00000301897 C6orf222P0C671 652 aaPredicted RBP17.64■□□□□ 0.41
CCDC88B-201ENST00000301897 LRRFIP1Q32MZ4 808 aaKnown RBP17.64■□□□□ 0.41
CCDC88B-201ENST00000301897 MFSD5Q6N075 450 aa17.64■□□□□ 0.41
CCDC88B-201ENST00000301897 ZNF444Q8N0Y2 327 aaPredicted RBP17.64■□□□□ 0.41
CCDC88B-201ENST00000301897 ANKRD35Q8N283 1001 aa17.64■□□□□ 0.41
CCDC88B-201ENST00000301897 KBTBD3Q8NAB2 608 aa17.64■□□□□ 0.41
CCDC88B-201ENST00000301897 MKL1Q969V6 931 aa17.64■□□□□ 0.41
CCDC88B-201ENST00000301897 UPF3AQ9H1J1 476 aaKnown RBP17.64■□□□□ 0.41
CCDC88B-201ENST00000301897 SLC38A10Q9HBR0 1119 aa17.64■□□□□ 0.41
CCDC88B-201ENST00000301897 ECHDC1Q9NTX5 307 aa17.64■□□□□ 0.41
CCDC88B-201ENST00000301897 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.64■□□□□ 0.41
CCDC88B-201ENST00000301897 CLIP2Q9UDT6 1046 aa17.64■□□□□ 0.41
CCDC88B-201ENST00000301897 TBX21Q9UL17 535 aa17.64■□□□□ 0.41
CCDC88B-201ENST00000301897 MCM3APO60318 1980 aa17.63■□□□□ 0.41
CCDC88B-201ENST00000301897 A0A0U1RQG5 324 aaPredicted RBP17.63■□□□□ 0.41
CCDC88B-201ENST00000301897 MINDY4BA8MYZ0 360 aa17.63■□□□□ 0.41
CCDC88B-201ENST00000301897 TLR3O15455 904 aaKnown RBP17.63■□□□□ 0.41
CCDC88B-201ENST00000301897 CHGBP05060 677 aa17.63■□□□□ 0.41
CCDC88B-201ENST00000301897 CPXCR1Q8N123 301 aa17.63■□□□□ 0.41
CCDC88B-201ENST00000301897 GMCL1P1Q8NEA9 526 aa17.63■□□□□ 0.41
CCDC88B-201ENST00000301897 APPBP2Q92624 585 aa17.63■□□□□ 0.41
CCDC88B-201ENST00000301897 KIFC2Q96AC6 838 aa17.63■□□□□ 0.41
CCDC88B-201ENST00000301897 VTI1AQ96AJ9 217 aa17.63■□□□□ 0.41
CCDC88B-201ENST00000301897 RIPK3Q9Y572 518 aa17.63■□□□□ 0.41
CCDC88B-201ENST00000301897 IGKV6D-41A0A0C4DH26 115 aa17.62■□□□□ 0.41
CCDC88B-201ENST00000301897 TTLL1O95922 423 aa17.62■□□□□ 0.41
CCDC88B-201ENST00000301897 ASGR1P07306 291 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms