RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 RUFY3Q7L099 469 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 CATIPQ7Z7H3 387 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 FAM160B2Q86V87 743 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 TMTC2Q8N394 836 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 REPS2Q8NFH8 660 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 NUP133Q8WUM0 1156 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 PORCNQ9H237 461 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 BRPF3Q9ULD4 1205 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 PRR12Q9ULL5 1215 aa14.92□□□□□ -0.02
SS18-202ENST00000269138 CASP8AP2Q9UKL3 1982 aa14.91□□□□□ -0.02
SS18-202ENST00000269138 PARP1P09874 1014 aaKnown RBP14.91□□□□□ -0.02
SS18-202ENST00000269138 RXRAP19793 462 aa14.91□□□□□ -0.02
SS18-202ENST00000269138 PSMC4P43686 418 aa14.91□□□□□ -0.02
SS18-202ENST00000269138 PLS1Q14651 629 aa14.91□□□□□ -0.02
SS18-202ENST00000269138 GRM4Q14833 912 aa14.91□□□□□ -0.02
SS18-202ENST00000269138 SYDE2Q5VT97 1194 aa14.91□□□□□ -0.02
SS18-202ENST00000269138 SGMS1Q86VZ5 419 aa14.91□□□□□ -0.02
SS18-202ENST00000269138 MB21D1Q8N884 522 aa14.91□□□□□ -0.02
SS18-202ENST00000269138 IL17RAQ96F46 866 aa14.91□□□□□ -0.02
SS18-202ENST00000269138 ERO1AQ96HE7 468 aa14.91□□□□□ -0.02
SS18-202ENST00000269138 TRIM47Q96LD4 638 aa14.91□□□□□ -0.02
SS18-202ENST00000269138 BACH2Q9BYV9 841 aa14.91□□□□□ -0.02
SS18-202ENST00000269138 MAD2L2Q9UI95 211 aa14.91□□□□□ -0.02
SS18-202ENST00000269138 CYP46A1Q9Y6A2 500 aa14.91□□□□□ -0.02
SS18-202ENST00000269138 PALM3A6NDB9 673 aaPredicted RBP14.9□□□□□ -0.02
SS18-202ENST00000269138 ZBED4O75132 1171 aa14.9□□□□□ -0.02
SS18-202ENST00000269138 FGD1P98174 961 aa14.9□□□□□ -0.02
SS18-202ENST00000269138 APOBRQ0VD83 1088 aa14.9□□□□□ -0.02
SS18-202ENST00000269138 SLC35G1Q2M3R5 365 aa14.9□□□□□ -0.02
SS18-202ENST00000269138 ASPRV1Q53RT3 343 aa14.9□□□□□ -0.02
SS18-202ENST00000269138 GPATCH4Q5T3I0 446 aaKnown RBP14.9□□□□□ -0.02
SS18-202ENST00000269138 CCDC144CPQ8IYA2 1237 aa14.9□□□□□ -0.02
SS18-202ENST00000269138 BRF1Q92994 677 aa14.9□□□□□ -0.02
SS18-202ENST00000269138 MOV10L1Q9BXT6 1211 aaKnown RBP14.9□□□□□ -0.02
SS18-202ENST00000269138 C22orf23Q9BZE7 217 aa14.9□□□□□ -0.02
SS18-202ENST00000269138 SPATC1LQ9H0A9 340 aa14.9□□□□□ -0.02
SS18-202ENST00000269138 EFCC1Q9HA90 598 aa14.9□□□□□ -0.02
SS18-202ENST00000269138 SLC38A10Q9HBR0 1119 aa14.9□□□□□ -0.02
SS18-202ENST00000269138 DDAH1O94760 285 aa14.89□□□□□ -0.03
SS18-202ENST00000269138 FMNL1O95466 1100 aaPredicted RBP14.89□□□□□ -0.03
SS18-202ENST00000269138 KIF22Q14807 665 aa14.89□□□□□ -0.03
SS18-202ENST00000269138 CPXCR1Q8N123 301 aa14.89□□□□□ -0.03
SS18-202ENST00000269138 LARP6Q9BRS8 491 aaKnown RBP14.89□□□□□ -0.03
SS18-202ENST00000269138 RAVER2Q9HCJ3 691 aaKnown RBP14.89□□□□□ -0.03
SS18-202ENST00000269138 PDRG1Q9NUG6 133 aa14.89□□□□□ -0.03
SS18-202ENST00000269138 ZNF214Q9UL59 606 aaPredicted RBP14.89□□□□□ -0.03
SS18-202ENST00000269138 SLC12A7Q9Y666 1083 aa14.89□□□□□ -0.03
SS18-202ENST00000269138 PARP14Q460N5 1801 aa14.89□□□□□ -0.03
SS18-202ENST00000269138 ZSWIM8A7E2V4 1837 aa14.88□□□□□ -0.03
SS18-202ENST00000269138 KLF18A0A0U1RQI7 1052 aa14.88□□□□□ -0.03
SS18-202ENST00000269138 KLRF2D3W0D1 207 aa14.88□□□□□ -0.03
SS18-202ENST00000269138 TAL1P17542 331 aaPredicted RBP14.88□□□□□ -0.03
SS18-202ENST00000269138 STAT3P40763 770 aa14.88□□□□□ -0.03
SS18-202ENST00000269138 SLC4A3P48751 1232 aa14.88□□□□□ -0.03
SS18-202ENST00000269138 TOB2Q14106 344 aaPredicted RBP14.88□□□□□ -0.03
SS18-202ENST00000269138 CCDC174Q6PII3 467 aa14.88□□□□□ -0.03
SS18-202ENST00000269138 APOA5Q6Q788 366 aa14.88□□□□□ -0.03
SS18-202ENST00000269138 OTOP1Q7RTM1 612 aa14.88□□□□□ -0.03
SS18-202ENST00000269138 NBPF11Q86T75 865 aa14.88□□□□□ -0.03
SS18-202ENST00000269138 KIF2CQ99661 725 aa14.88□□□□□ -0.03
SS18-202ENST00000269138 AGXT2Q9BYV1 514 aa14.88□□□□□ -0.03
SS18-202ENST00000269138 VAT1LQ9HCJ6 419 aa14.88□□□□□ -0.03
SS18-202ENST00000269138 RIPK3Q9Y572 518 aa14.88□□□□□ -0.03
SS18-202ENST00000269138 CTDP1Q9Y5B0 961 aaPredicted RBP14.88□□□□□ -0.03
SS18-202ENST00000269138 ZNF536O15090 1300 aa14.88□□□□□ -0.03
SS18-202ENST00000269138 FCGRTP55899 365 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 MICU3Q86XE3 530 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 ADGRF4Q8IZF3 695 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 FBXL16Q8N461 479 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 AGBL1Q96MI9 1066 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 RANBP17Q9H2T7 1088 aaKnown RBP14.87□□□□□ -0.03
SS18-202ENST00000269138 NAP1L2Q9ULW6 460 aaPredicted RBP14.87□□□□□ -0.03
SS18-202ENST00000269138 TRIM17Q9Y577 477 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 A0A0G2JMZ2 1700 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 TNPO2O14787 897 aaKnown RBP14.87□□□□□ -0.03
SS18-202ENST00000269138 ERCC3P19447 782 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 RBM25P49756 843 aaKnown RBP14.87□□□□□ -0.03
SS18-202ENST00000269138 CCNA1P78396 465 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 COL13A1Q5TAT6 717 aaPredicted RBP14.87□□□□□ -0.03
SS18-202ENST00000269138 WDR78Q5VTH9 848 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 SNRNP48Q6IEG0 339 aaKnown RBP14.87□□□□□ -0.03
SS18-202ENST00000269138 SYNE3Q6ZMZ3 975 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 CTU1Q7Z7A3 348 aaKnown RBP14.87□□□□□ -0.03
SS18-202ENST00000269138 NCAPG2Q86XI2 1143 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 RIOX2Q8IUF8 465 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 CCAR1Q8IX12 1150 aaKnown RBP14.87□□□□□ -0.03
SS18-202ENST00000269138 CMTR1Q8N1G2 835 aaKnown RBP14.87□□□□□ -0.03
SS18-202ENST00000269138 FANCBQ8NB91 859 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 CTCFLQ8NI51 663 aaPredicted RBP14.87□□□□□ -0.03
SS18-202ENST00000269138 MAP3K14Q99558 947 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 JMJD4Q9H9V9 463 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 GABRQQ9UN88 632 aa14.87□□□□□ -0.03
SS18-202ENST00000269138 ATP2A1O14983 1001 aa14.86□□□□□ -0.03
SS18-202ENST00000269138 ZBTB43O43298 467 aa14.86□□□□□ -0.03
SS18-202ENST00000269138 CYTH3O43739 400 aa14.86□□□□□ -0.03
SS18-202ENST00000269138 PLEKHA8P1O95397 391 aa14.86□□□□□ -0.03
SS18-202ENST00000269138 CALM1P0DP23 149 aa14.86□□□□□ -0.03
SS18-202ENST00000269138 CALM2P0DP24 149 aa14.86□□□□□ -0.03
SS18-202ENST00000269138 CALM3P0DP25 149 aa14.86□□□□□ -0.03
SS18-202ENST00000269138 FDX1P10109 184 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms