RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 CPXCR1Q8N123 301 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 MAGEF1Q9HAY2 307 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 COPB1P53618 953 aaKnown RBP11.87□□□□□ -0.51
CD44-201ENST00000263398 ATP11AP98196 1134 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 ARHGAP44Q17R89 818 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 RAB3IL1Q8TBN0 382 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 MED4Q9NPJ6 270 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 ATG3Q9NT62 314 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 TRPM1Q7Z4N2 1603 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 KIF23Q02241 960 aaPredicted RBP11.87□□□□□ -0.51
CD44-201ENST00000263398 TCP10Q12799 353 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 NECTIN1Q15223 517 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 FAM26FQ5R3K3 315 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 PAXIP1Q6ZW49 1069 aaPredicted RBP11.87□□□□□ -0.51
CD44-201ENST00000263398 UIMC1Q96RL1 719 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 PSTPIP2Q9H939 334 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 EFCAB6Q5THR3 1501 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 DDX39AO00148 427 aaKnown RBP11.87□□□□□ -0.51
CD44-201ENST00000263398 GAS7O60861 476 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 SLC8A3P57103 927 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 CHRNDQ07001 517 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 NSMFQ6X4W1 530 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 TPH2Q8IWU9 490 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 U2AF1L4Q8WU68 220 aaKnown RBP11.87□□□□□ -0.51
CD44-201ENST00000263398 KIFC2Q96AC6 838 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 CUEDC2Q9H467 287 aa11.87□□□□□ -0.51
CD44-201ENST00000263398 METTL14Q9HCE5 456 aaKnown RBP11.87□□□□□ -0.51
CD44-201ENST00000263398 E7EVH7 732 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 POLA2Q14181 598 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 DENND2CQ68D51 928 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 CHURC1Q8WUH1 139 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 PPP1R13BQ96KQ4 1090 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 PICK1Q9NRD5 415 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 PTCH1Q13635 1447 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 CCDC160A6NGH7 325 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 KCNK3O14649 394 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 GTF2IP78347 998 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 LONRF2Q1L5Z9 754 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 C11orf57Q6ZUT1 292 aaPredicted RBP11.86□□□□□ -0.51
CD44-201ENST00000263398 TEKT1Q969V4 418 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 USP40Q9NVE5 1235 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 MYO1AQ9UBC5 1043 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 TET3O43151 1660 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 H2AFZP0C0S5 128 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 CASP14P31944 242 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 CTNNA1P35221 906 aaKnown RBP11.86□□□□□ -0.51
CD44-201ENST00000263398 SNX16P57768 344 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 H2AFVQ71UI9 128 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 SRGAP1Q7Z6B7 1085 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 ANAPC4Q9UJX5 808 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 USP6P35125 1406 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 ATP8B1O43520 1251 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 NAA25Q14CX7 972 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 PNMA8AQ86V59 439 aaPredicted RBP11.86□□□□□ -0.51
CD44-201ENST00000263398 RDH13Q8NBN7 331 aa11.86□□□□□ -0.51
CD44-201ENST00000263398 GPKOWQ92917 476 aaPredicted RBP eCLIP11.86□□□□□ -0.51
CD44-201ENST00000263398 FMNL1O95466 1100 aaPredicted RBP11.85□□□□□ -0.51
CD44-201ENST00000263398 IFNAR1P17181 557 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 PTPN12Q05209 780 aaKnown RBP11.85□□□□□ -0.51
CD44-201ENST00000263398 NEDD9Q14511 834 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 HHATQ5VTY9 493 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.85□□□□□ -0.51
CD44-201ENST00000263398 SLC39A2Q9NP94 309 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 TMOD4Q9NZQ9 345 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 LAD1O00515 517 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 KRIT1O00522 736 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 ZBED4O75132 1171 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 CD19P15391 556 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 EEF1GP26641 437 aaKnown RBP11.85□□□□□ -0.51
CD44-201ENST00000263398 PSMC4P43686 418 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 CEP85LQ5SZL2 805 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 SLFN12Q8IYM2 578 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 GOLGA5Q8TBA6 731 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 PI4K2BQ8TCG2 481 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 MRRFQ96E11 262 aaKnown RBP11.85□□□□□ -0.51
CD44-201ENST00000263398 TUBGCP2Q9BSJ2 902 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 USTQ9Y2C2 406 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 RGS16O15492 202 aaPredicted RBP11.85□□□□□ -0.51
CD44-201ENST00000263398 CIB2O75838 187 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 SLFN14P0C7P3 912 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 KRT15P19012 456 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 GUCY2FP51841 1108 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 LGSNQ5TDP6 509 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 CDAN1Q8IWY9 1227 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 FAM184BQ9ULE4 1060 aa11.85□□□□□ -0.51
CD44-201ENST00000263398 UNC13BO14795 1591 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 ABCB4P21439 1286 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 POLD1P28340 1107 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 ADD2P35612 726 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 CPSF1Q10570 1443 aaKnown RBP11.84□□□□□ -0.51
CD44-201ENST00000263398 RESTQ13127 1097 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 FAM71BQ8TC56 605 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 PANK4Q9NVE7 773 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 LARSQ9P2J5 1176 aaKnown RBP11.84□□□□□ -0.51
CD44-201ENST00000263398 COL4A3BPQ9Y5P4 624 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 LMTK3Q96Q04 1460 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 CDK12Q9NYV4 1490 aaPredicted RBP11.84□□□□□ -0.51
CD44-201ENST00000263398 GOLGA8KD6RF30 607 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 SEMA3EO15041 775 aa11.84□□□□□ -0.51
CD44-201ENST00000263398 SASH1O94885 1247 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms