RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 HSD3B7Q9H2F3 369 aa14.71□□□□□ -0.05
SPTLC1-201ENST00000262554 DBNDD1Q9H9R9 158 aa14.71□□□□□ -0.05
SPTLC1-201ENST00000262554 SERPINC1P01008 464 aa14.7□□□□□ -0.06
SPTLC1-201ENST00000262554 HLA-DOAP06340 250 aa14.7□□□□□ -0.06
SPTLC1-201ENST00000262554 LONP1P36776 959 aaKnown RBP14.7□□□□□ -0.06
SPTLC1-201ENST00000262554 NAPAP54920 295 aa14.7□□□□□ -0.06
SPTLC1-201ENST00000262554 SH3RF1Q7Z6J0 888 aa14.7□□□□□ -0.06
SPTLC1-201ENST00000262554 RASGRP4Q8TDF6 673 aa14.7□□□□□ -0.06
SPTLC1-201ENST00000262554 ZMYND12Q9H0C1 365 aa14.7□□□□□ -0.06
SPTLC1-201ENST00000262554 C6orf50Q9HD87 102 aa14.7□□□□□ -0.06
SPTLC1-201ENST00000262554 SLX4Q8IY92 1834 aa14.7□□□□□ -0.06
SPTLC1-201ENST00000262554 AKR1B1P15121 316 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 GNA11P29992 359 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 TXLNAP40222 546 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 AFMP43652 599 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 CRKP46108 304 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 FKBP1AP62942 108 aaKnown RBP14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 ASPRV1Q53RT3 343 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 CT47A1Q5JQC4 288 aaPredicted RBP14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 SOGA3Q5TF21 947 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 APOBEC3HQ6NTF7 200 aaKnown RBP14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 RASGRP2Q7LDG7 609 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 TMC6Q7Z403 805 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 C4orf32Q8N8J7 132 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 FANCLQ9NW38 375 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 IGKV6D-41A0A0C4DH26 115 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 USP17L5A8MUK1 530 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 TTLL1O95922 423 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 PDHBP11177 359 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 ATP1A3P13637 1013 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 UBASH3AP57075 661 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 IL17AQ16552 155 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 STRIP1Q5VSL9 837 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 KRT25Q7Z3Z0 450 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 HOMER1Q86YM7 354 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 CCDC150Q8NCX0 1101 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 CNKSR1Q969H4 720 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 PRIMPOLQ96LW4 560 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 ZDHHC15Q96MV8 337 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 GSDMAQ96QA5 445 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 MRIQ9BWK5 157 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 CPVLQ9H3G5 476 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 C10orf71Q711Q0 1435 aa14.69□□□□□ -0.06
SPTLC1-201ENST00000262554 SMCO2A6NFE2 343 aa14.68□□□□□ -0.06
SPTLC1-201ENST00000262554 hCG_1984214I3L0E3 225 aa14.68□□□□□ -0.06
SPTLC1-201ENST00000262554 LAD1O00515 517 aa14.68□□□□□ -0.06
SPTLC1-201ENST00000262554 SKILP12757 684 aa14.68□□□□□ -0.06
SPTLC1-201ENST00000262554 ERCC5P28715 1186 aaPredicted RBP14.68□□□□□ -0.06
SPTLC1-201ENST00000262554 ARID5BQ14865 1188 aa14.68□□□□□ -0.06
SPTLC1-201ENST00000262554 INF2Q27J81 1249 aa14.68□□□□□ -0.06
SPTLC1-201ENST00000262554 ZNF713Q8N859 430 aaPredicted RBP14.68□□□□□ -0.06
SPTLC1-201ENST00000262554 ENOX1Q8TC92 643 aaKnown RBP14.68□□□□□ -0.06
SPTLC1-201ENST00000262554 RIOX1Q9H6W3 641 aa14.68□□□□□ -0.06
SPTLC1-201ENST00000262554 VAT1LQ9HCJ6 419 aa14.68□□□□□ -0.06
SPTLC1-201ENST00000262554 MYH4Q9Y623 1939 aa14.68□□□□□ -0.06
SPTLC1-201ENST00000262554 ECE2O60344 883 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 DPYDQ12882 1025 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 E2F4Q16254 413 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 CFAP100Q494V2 611 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 PPP4R3BQ5MIZ7 849 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 DTHD1Q6ZMT9 781 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 PIGSQ96S52 555 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 EHD4Q9H223 541 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 FRMPD2Q68DX3 1309 aaPredicted RBP14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 GREB1LQ9C091 1923 aaPredicted RBP14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 UQCRHLA0A096LP55 91 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 NRDCO43847 1150 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 UQCRHP07919 91 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 SHMT1P34896 483 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 HDLBPQ00341 1268 aaKnown RBP14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 NONOQ15233 471 aaKnown RBP eCLIP14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 LRRC47Q8N1G4 583 aaKnown RBP14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 PLCD3Q8N3E9 789 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 UBA5Q9GZZ9 404 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 KCNQ5Q9NR82 932 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 NFE2L3Q9Y4A8 694 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 SCN9AQ15858 1988 aa14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 ZNF646O15015 1829 aaPredicted RBP14.67□□□□□ -0.06
SPTLC1-201ENST00000262554 ESYT2A0FGR8 921 aa14.66□□□□□ -0.06
SPTLC1-201ENST00000262554 SNHG28P0DPA3 235 aa14.66□□□□□ -0.06
SPTLC1-201ENST00000262554 SFPQP23246 707 aaKnown RBP eCLIP14.66□□□□□ -0.06
SPTLC1-201ENST00000262554 PRPHP41219 470 aa14.66□□□□□ -0.06
SPTLC1-201ENST00000262554 CCZ1BP86790 482 aa14.66□□□□□ -0.06
SPTLC1-201ENST00000262554 CCZ1P86791 482 aaPredicted RBP14.66□□□□□ -0.06
SPTLC1-201ENST00000262554 FMR1Q06787 632 aaKnown RBP eCLIP14.66□□□□□ -0.06
SPTLC1-201ENST00000262554 SLC15A2Q16348 729 aa14.66□□□□□ -0.06
SPTLC1-201ENST00000262554 PDXDC2PQ6P474 469 aa14.66□□□□□ -0.06
SPTLC1-201ENST00000262554 KIAA0825Q8IV33 1275 aa14.66□□□□□ -0.06
SPTLC1-201ENST00000262554 CCDC17Q96LX7 622 aa14.66□□□□□ -0.06
SPTLC1-201ENST00000262554 DHX36Q9H2U1 1008 aaKnown RBP14.66□□□□□ -0.06
SPTLC1-201ENST00000262554 MPHOSPH10O00566 681 aaKnown RBP14.65□□□□□ -0.06
SPTLC1-201ENST00000262554 GTPBP6O43824 516 aaPredicted RBP14.65□□□□□ -0.06
SPTLC1-201ENST00000262554 CDK11BP21127 795 aaKnown RBP14.65□□□□□ -0.06
SPTLC1-201ENST00000262554 CHRNA5P30532 468 aa14.65□□□□□ -0.06
SPTLC1-201ENST00000262554 RBM5P52756 815 aaKnown RBP eCLIP14.65□□□□□ -0.06
SPTLC1-201ENST00000262554 EIF6P56537 245 aaKnown RBP14.65□□□□□ -0.06
SPTLC1-201ENST00000262554 NFIAQ12857 509 aa14.65□□□□□ -0.06
SPTLC1-201ENST00000262554 DACT2Q5SW24 774 aa14.65□□□□□ -0.06
SPTLC1-201ENST00000262554 STK32BQ9NY57 414 aa14.65□□□□□ -0.06
SPTLC1-201ENST00000262554 STAT6P42226 847 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms