RNA–Protein interactions for RNA: ENST00000248139.7

RAB40C-201, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB40C, Length 2,699 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-201ENST00000248139 PCDHA4Q9UN74 947 aa28.86■■■□□ 2.21
RAB40C-201ENST00000248139 TSPY3P0CV98 308 aa28.86■■■□□ 2.21
RAB40C-201ENST00000248139 TSPY8P0CW00 308 aa28.86■■■□□ 2.21
RAB40C-201ENST00000248139 NAALADL2Q58DX5 795 aa28.86■■■□□ 2.21
RAB40C-201ENST00000248139 NUP88Q99567 741 aaPredicted RBP28.86■■■□□ 2.21
RAB40C-201ENST00000248139 NYXQ9GZU5 481 aa28.86■■■□□ 2.21
RAB40C-201ENST00000248139 MKRN1Q9UHC7 482 aaKnown RBP28.86■■■□□ 2.21
RAB40C-201ENST00000248139 COL5A3P25940 1745 aaPredicted RBP28.85■■■□□ 2.21
RAB40C-201ENST00000248139 DLEC1Q9Y238 1755 aa28.85■■■□□ 2.21
RAB40C-201ENST00000248139 CCDC194A0A1B0GVG4 234 aa28.85■■■□□ 2.21
RAB40C-201ENST00000248139 KCNJ18B7U540 433 aa28.85■■■□□ 2.21
RAB40C-201ENST00000248139 ZRANB2O95218 330 aaKnown RBP eCLIP28.85■■■□□ 2.212e-6■■■□□ 16.1
RAB40C-201ENST00000248139 KCNJ12Q14500 433 aa28.85■■■□□ 2.21
RAB40C-201ENST00000248139 ARHGEF1Q92888 912 aaKnown RBP28.85■■■□□ 2.21
RAB40C-201ENST00000248139 EP400Q96L91 3159 aa28.85■■■□□ 2.21
RAB40C-201ENST00000248139 COL22A1Q8NFW1 1626 aaPredicted RBP28.85■■■□□ 2.21
RAB40C-201ENST00000248139 GABPB1Q06547 395 aaPredicted RBP28.85■■■□□ 2.21
RAB40C-201ENST00000248139 NRAPQ86VF7 1730 aa28.85■■■□□ 2.21
RAB40C-201ENST00000248139 PCDHA6Q9UN73 950 aa28.85■■■□□ 2.21
RAB40C-201ENST00000248139 PCDHA8Q9Y5H6 950 aa28.85■■■□□ 2.21
RAB40C-201ENST00000248139 SASH3O75995 380 aa28.84■■■□□ 2.21
RAB40C-201ENST00000248139 TRAPPC10P48553 1259 aa28.84■■■□□ 2.21
RAB40C-201ENST00000248139 TCP11X2Q5H9J9 407 aa28.84■■■□□ 2.21
RAB40C-201ENST00000248139 RWDD2AQ9UIY3 292 aa28.84■■■□□ 2.21
RAB40C-201ENST00000248139 ZNF658Q5TYW1 1059 aaPredicted RBP28.84■■■□□ 2.21
RAB40C-201ENST00000248139 CHP1Q99653 195 aa28.83■■■□□ 2.21
RAB40C-201ENST00000248139 PARD6BQ9BYG5 372 aa28.83■■■□□ 2.21
RAB40C-201ENST00000248139 ARGLU1Q9NWB6 273 aaPredicted RBP28.83■■■□□ 2.21
RAB40C-201ENST00000248139 RPS6KA4O75676 772 aa28.83■■■□□ 2.21
RAB40C-201ENST00000248139 DTHD1Q6ZMT9 781 aa28.83■■■□□ 2.21
RAB40C-201ENST00000248139 C8orf37Q96NL8 207 aa28.83■■■□□ 2.21
RAB40C-201ENST00000248139 SLF1Q9BQI6 1058 aa28.83■■■□□ 2.21
RAB40C-201ENST00000248139 VAT1LQ9HCJ6 419 aa28.83■■■□□ 2.21
RAB40C-201ENST00000248139 DISC1Q9NRI5 854 aa28.83■■■□□ 2.21
RAB40C-201ENST00000248139 LIMA1Q9UHB6 759 aaKnown RBP28.83■■■□□ 2.21
RAB40C-201ENST00000248139 TFR2Q9UP52 801 aa28.83■■■□□ 2.21
RAB40C-201ENST00000248139 CALML3P27482 149 aa28.82■■■□□ 2.2
RAB40C-201ENST00000248139 UBXN1Q04323 297 aa28.82■■■□□ 2.2
RAB40C-201ENST00000248139 IRF2BP1Q8IU81 584 aa28.82■■■□□ 2.2
RAB40C-201ENST00000248139 POLR3GO15318 223 aaPredicted RBP28.82■■■□□ 2.2
RAB40C-201ENST00000248139 CT47A1Q5JQC4 288 aaPredicted RBP28.82■■■□□ 2.2
RAB40C-201ENST00000248139 TMEM47Q9BQJ4 181 aa28.82■■■□□ 2.2
RAB40C-201ENST00000248139 DNAJC5Q9H3Z4 198 aa28.82■■■□□ 2.2
RAB40C-201ENST00000248139 ABHD10Q9NUJ1 306 aa28.82■■■□□ 2.2
RAB40C-201ENST00000248139 CNTNAP4Q9C0A0 1308 aa28.82■■■□□ 2.2
RAB40C-201ENST00000248139 LONP1P36776 959 aaKnown RBP28.81■■■□□ 2.2
RAB40C-201ENST00000248139 RSRC2Q7L4I2 434 aaKnown RBP28.81■■■□□ 2.2
RAB40C-201ENST00000248139 ZNF444Q8N0Y2 327 aaPredicted RBP28.81■■■□□ 2.2
RAB40C-201ENST00000248139 SLC35F6Q8N357 371 aa28.81■■■□□ 2.2
RAB40C-201ENST00000248139 KIAA1551Q9HCM1 1747 aa28.81■■■□□ 2.2
RAB40C-201ENST00000248139 KRT9P35527 623 aa28.81■■■□□ 2.2
RAB40C-201ENST00000248139 DGKHQ86XP1 1220 aa28.81■■■□□ 2.2
RAB40C-201ENST00000248139 CNGA4Q8IV77 575 aa28.81■■■□□ 2.2
RAB40C-201ENST00000248139 TRIM10Q9UDY6 481 aa28.81■■■□□ 2.2
RAB40C-201ENST00000248139 IRS2Q9Y4H2 1338 aa28.81■■■□□ 2.2
RAB40C-201ENST00000248139 AHDC1Q5TGY3 1603 aaPredicted RBP28.81■■■□□ 2.2
RAB40C-201ENST00000248139 KIF5CO60282 957 aa28.8■■■□□ 2.2
RAB40C-201ENST00000248139 TXLNAP40222 546 aa28.8■■■□□ 2.2
RAB40C-201ENST00000248139 ZCCHC17Q9NP64 241 aaKnown RBP28.8■■■□□ 2.2
RAB40C-201ENST00000248139 GRM4Q14833 912 aa28.8■■■□□ 2.2
RAB40C-201ENST00000248139 ERICH4A6NGS2 130 aa28.79■■■□□ 2.2
RAB40C-201ENST00000248139 M0R2N6 131 aa28.79■■■□□ 2.2
RAB40C-201ENST00000248139 UBA7P41226 1012 aa28.79■■■□□ 2.2
RAB40C-201ENST00000248139 CCNL1Q9UK58 526 aaPredicted RBP28.79■■■□□ 2.2
RAB40C-201ENST00000248139 KIF4BQ2VIQ3 1234 aa28.79■■■□□ 2.2
RAB40C-201ENST00000248139 ARL6IP4Q66PJ3 421 aaKnown RBP28.79■■■□□ 2.2
RAB40C-201ENST00000248139 USP17L2Q6R6M4 530 aa28.79■■■□□ 2.2
RAB40C-201ENST00000248139 RTCBQ9Y3I0 505 aaKnown RBP28.79■■■□□ 2.2
RAB40C-201ENST00000248139 LRRC10BA6NIK2 292 aa28.78■■■□□ 2.2
RAB40C-201ENST00000248139 STXBP3O00186 592 aa28.78■■■□□ 2.2
RAB40C-201ENST00000248139 PARP1P09874 1014 aaKnown RBP28.78■■■□□ 2.2
RAB40C-201ENST00000248139 CC2D1AQ6P1N0 951 aaPredicted RBP28.78■■■□□ 2.2
RAB40C-201ENST00000248139 TBC1D8O95759 1140 aa28.78■■■□□ 2.2
RAB40C-201ENST00000248139 SPTY2D1Q68D10 685 aaPredicted RBP28.78■■■□□ 2.2
RAB40C-201ENST00000248139 NAA15Q9BXJ9 866 aaKnown RBP28.78■■■□□ 2.2
RAB40C-201ENST00000248139 LAMB1P07942 1786 aa28.78■■■□□ 2.2
RAB40C-201ENST00000248139 LETM2Q2VYF4 491 aa28.77■■■□□ 2.2
RAB40C-201ENST00000248139 KLRF2D3W0D1 207 aa28.77■■■□□ 2.2
RAB40C-201ENST00000248139 TPM1P09493 284 aa28.77■■■□□ 2.2
RAB40C-201ENST00000248139 RASA1P20936 1047 aa28.77■■■□□ 2.2
RAB40C-201ENST00000248139 GPR161Q8N6U8 529 aaKnown RBP28.77■■■□□ 2.2
RAB40C-201ENST00000248139 HPS3Q969F9 1004 aa28.77■■■□□ 2.2
RAB40C-201ENST00000248139 PDS5AQ29RF7 1337 aaKnown RBP28.77■■■□□ 2.2
RAB40C-201ENST00000248139 NKRFO15226 690 aaKnown RBP eCLIP28.77■■■□□ 2.2
RAB40C-201ENST00000248139 ADSSL1Q8N142 457 aa28.77■■■□□ 2.2
RAB40C-201ENST00000248139 NGLY1Q96IV0 654 aa28.77■■■□□ 2.2
RAB40C-201ENST00000248139 TTC26A0AVF1 554 aa28.76■■■□□ 2.19
RAB40C-201ENST00000248139 KIF20AO95235 890 aa28.76■■■□□ 2.19
RAB40C-201ENST00000248139 GOLGA1Q92805 767 aa28.76■■■□□ 2.19
RAB40C-201ENST00000248139 KLRC4O43908 158 aa28.76■■■□□ 2.19
RAB40C-201ENST00000248139 CHMP4BP1P59074 171 aa28.76■■■□□ 2.19
RAB40C-201ENST00000248139 RMND1Q9NWS8 449 aa28.76■■■□□ 2.19
RAB40C-201ENST00000248139 BARHL2Q9NY43 387 aa28.76■■■□□ 2.19
RAB40C-201ENST00000248139 CCDC88AQ3V6T2 1871 aa28.76■■■□□ 2.19
RAB40C-201ENST00000248139 ITIH6Q6UXX5 1313 aa28.75■■■□□ 2.19
RAB40C-201ENST00000248139 CCNT1O60563 726 aaKnown RBP28.75■■■□□ 2.19
RAB40C-201ENST00000248139 TRIM47Q96LD4 638 aa28.75■■■□□ 2.19
RAB40C-201ENST00000248139 UBA5Q9GZZ9 404 aa28.75■■■□□ 2.19
RAB40C-201ENST00000248139 ARHGAP25P42331 645 aa28.74■■■□□ 2.19
RAB40C-201ENST00000248139 KLK7P49862 253 aa28.74■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms