RNA–Protein interactions for RNA: YLL039C

UBI4, Transcript of Ubiquitin, yeast

Gene UBI4, Length 1,146 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBI4	YLL039C	ZRT2	Q12436	422 aa		4.6	□□□□□ -1.67
UBI4	YLL039C	MIS1	P09440	975 aa	Known RBP	4.59	□□□□□ -1.67
UBI4	YLL039C	PMR1	P13586	950 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	ARF2	P19146	181 aa	Known RBP	4.59	□□□□□ -1.67
UBI4	YLL039C	GAL11	P19659	1081 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	FPR1	P20081	114 aa	Known RBP	4.59	□□□□□ -1.67
UBI4	YLL039C	RPC82	P32349	654 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	AIM26	P32858	118 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	FUI1	P38196	639 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	KAP104	P38217	918 aa	Known RBP	4.59	□□□□□ -1.67
UBI4	YLL039C	OLA1	P38219	394 aa	Known RBP	4.59	□□□□□ -1.67
UBI4	YLL039C	TIF5	P38431	405 aa	Known RBP	4.59	□□□□□ -1.67
UBI4	YLL039C	MMS21	P38632	267 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	DIA4	P38705	446 aa	Predicted RBP	4.59	□□□□□ -1.67
UBI4	YLL039C	HSE1	P38753	452 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	SAK1	P38990	1142 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	SAW1	P39735	261 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	EXO1	P39875	702 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	UBP7	P40453	1071 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	MPH1	P40562	993 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	MKT1	P40850	830 aa	Known RBP	4.59	□□□□□ -1.67
UBI4	YLL039C	ERG10	P41338	398 aa	Known RBP	4.59	□□□□□ -1.67
UBI4	YLL039C	RMD8	P43620	662 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	SET2	P46995	733 aa	Known RBP	4.59	□□□□□ -1.67
UBI4	YLL039C	YJL132W	P47014	750 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	YGR127W	P53275	312 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	VPS9	P54787	451 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	PEX13	P80667	386 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	ADI1	Q03677	179 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	CLU1	Q03690	1277 aa	Known RBP	4.59	□□□□□ -1.67
UBI4	YLL039C	ATG23	Q06671	453 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	AIM41	Q12032	185 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	EFG1	Q3E705	233 aa	Known RBP	4.59	□□□□□ -1.67
UBI4	YLL039C	SEY1	Q99287	776 aa		4.59	□□□□□ -1.67
UBI4	YLL039C	CDC8	P00572	216 aa		4.58	□□□□□ -1.68
UBI4	YLL039C	HSF1	P10961	833 aa		4.58	□□□□□ -1.68
UBI4	YLL039C	CLB4	P24871	460 aa		4.58	□□□□□ -1.68
UBI4	YLL039C	NIP1	P32497	812 aa	Known RBP	4.58	□□□□□ -1.68
UBI4	YLL039C	GCG1	P32656	232 aa	Known RBP	4.58	□□□□□ -1.68
UBI4	YLL039C	DUN1	P39009	513 aa		4.58	□□□□□ -1.68
UBI4	YLL039C	ARB1	P40024	610 aa	Known RBP	4.58	□□□□□ -1.68
UBI4	YLL039C	YMR134W	P40207	237 aa		4.58	□□□□□ -1.68
UBI4	YLL039C	ATM1	P40416	690 aa		4.58	□□□□□ -1.68
UBI4	YLL039C	YIL001W	P40560	513 aa		4.58	□□□□□ -1.68
UBI4	YLL039C	MAD1	P40957	749 aa		4.58	□□□□□ -1.68
UBI4	YLL039C	SEC26	P41810	973 aa	Known RBP	4.58	□□□□□ -1.68
UBI4	YLL039C	DLD2	P46681	530 aa	Known RBP	4.58	□□□□□ -1.68
UBI4	YLL039C	RPS10B	P46784	105 aa	Known RBP	4.58	□□□□□ -1.68
UBI4	YLL039C	RSM26	P47141	266 aa		4.58	□□□□□ -1.68
UBI4	YLL039C	HLJ1	P48353	224 aa		4.58	□□□□□ -1.68
UBI4	YLL039C	YNR061C	P53747	219 aa		4.58	□□□□□ -1.68
UBI4	YLL039C	YNR063W	P53749	607 aa		4.58	□□□□□ -1.68
UBI4	YLL039C	URH1	Q04179	340 aa		4.58	□□□□□ -1.68
UBI4	YLL039C	SPC24	Q04477	213 aa		4.58	□□□□□ -1.68
UBI4	YLL039C	RSC58	Q07979	502 aa		4.58	□□□□□ -1.68
UBI4	YLL039C	CLP1	Q08685	445 aa	Predicted RBP	4.58	□□□□□ -1.68
UBI4	YLL039C	RPS10A	Q08745	105 aa	Predicted RBP	4.58	□□□□□ -1.68
UBI4	YLL039C	FAP7	Q12055	197 aa	Predicted RBP	4.58	□□□□□ -1.68
UBI4	YLL039C	UBR1	P19812	1950 aa		4.58	□□□□□ -1.68
UBI4	YLL039C	CET1	O13297	549 aa	Predicted RBP	4.57	□□□□□ -1.68
UBI4	YLL039C	HSC82	P15108	705 aa	Known RBP	4.57	□□□□□ -1.68
UBI4	YLL039C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected
UBI4	YLL039C	GCD6	P32501	712 aa	Known RBP	4.57	□□□□□ -1.68
UBI4	YLL039C	KAR9	P32526	644 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	STE5	P32917	917 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	LOS1	P33418	1100 aa	Predicted RBP	4.57	□□□□□ -1.68
UBI4	YLL039C	MRP8	P35719	219 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	ADD66	P36040	267 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	RRP14	P36080	434 aa	Known RBP	4.57	□□□□□ -1.68
UBI4	YLL039C	MRPL40	P36534	297 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	MSG5	P38590	489 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	SRP68	P38687	599 aa	Known RBP	4.57	□□□□□ -1.68
UBI4	YLL039C	OTU2	P38747	307 aa	Known RBP	4.57	□□□□□ -1.68
UBI4	YLL039C	PPE1	P38796	400 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	CRP1	P38845	465 aa	Known RBP	4.57	□□□□□ -1.68
UBI4	YLL039C	OSW5	P40219	148 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	MND2	P40577	368 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	ASN2	P49090	572 aa	Known RBP	4.57	□□□□□ -1.68
UBI4	YLL039C	VEL1	P53058	206 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	VTI1	Q04338	217 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	FAR8	Q05040	523 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	ARR1	Q06596	294 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	SWC7	Q06707	132 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	PEX15	Q08215	383 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	AAD15	Q08361	143 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	NRT1	Q08485	598 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	YLL056C	Q12177	298 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	GLE1	Q12315	538 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	AVL9	Q12500	764 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	AFI1	Q99222	893 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	MEX67	Q99257	599 aa	Known RBP	4.57	□□□□□ -1.68
UBI4	YLL039C	AI5_ALPHA	Q9ZZX1	630 aa		4.57	□□□□□ -1.68
UBI4	YLL039C	SEN1	Q00416	2231 aa	Known RBP	4.57	□□□□□ -1.68
UBI4	YLL039C	MSF1	P08425	469 aa		4.56	□□□□□ -1.68
UBI4	YLL039C	PYC1	P11154	1178 aa	Known RBP	4.56	□□□□□ -1.68
UBI4	YLL039C	HEM13	P11353	328 aa	Known RBP	4.56	□□□□□ -1.68
UBI4	YLL039C	GCD2	P12754	651 aa	Predicted RBP	4.56	□□□□□ -1.68
UBI4	YLL039C	DAL81	P21657	970 aa		4.56	□□□□□ -1.68
UBI4	YLL039C	MIH1	P23748	554 aa		4.56	□□□□□ -1.68
UBI4	YLL039C	PUP2	P32379	260 aa		4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 19.4 ms