RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W WHI4Q07655 649 aaKnown RBP4.43□□□□□ -1.7
PRE9YGR135W TIP41Q12199 356 aa4.43□□□□□ -1.7
PRE9YGR135W OCA6Q12454 224 aa4.43□□□□□ -1.7
PRE9YGR135W PCD1Q12524 340 aa4.43□□□□□ -1.7
PRE9YGR135W RPS9BP05755 195 aaKnown RBP4.42□□□□□ -1.7
PRE9YGR135W ERG20P08524 352 aaKnown RBP4.42□□□□□ -1.7
PRE9YGR135W HMG2P12684 1045 aa4.42□□□□□ -1.7
PRE9YGR135W ADE2P21264 571 aaKnown RBP4.42□□□□□ -1.7
PRE9YGR135W RNR3P21672 869 aaKnown RBP4.42□□□□□ -1.7
PRE9YGR135W SED4P25365 1065 aa4.42□□□□□ -1.7
PRE9YGR135W ILV6P25605 309 aaKnown RBP4.42□□□□□ -1.7
PRE9YGR135W RPL5P26321 297 aaKnown RBP4.42□□□□□ -1.7
PRE9YGR135W CBF2P32504 956 aa4.42□□□□□ -1.7
PRE9YGR135W ATG19P35193 415 aa4.42□□□□□ -1.7
PRE9YGR135W MYO3P36006 1272 aa4.42□□□□□ -1.7
PRE9YGR135W NOP4P37838 685 aaKnown RBP4.42□□□□□ -1.7
PRE9YGR135W FSH1P38777 243 aaKnown RBP4.42□□□□□ -1.7
PRE9YGR135W YEL025CP39991 1188 aa4.42□□□□□ -1.7
PRE9YGR135W UBP7P40453 1071 aa4.42□□□□□ -1.7
PRE9YGR135W THI6P41835 540 aa4.42□□□□□ -1.7
PRE9YGR135W KAP114P53067 1004 aa4.42□□□□□ -1.7
PRE9YGR135W YGL138CP53122 345 aa4.42□□□□□ -1.7
PRE9YGR135W YNL144CP53907 740 aa4.42□□□□□ -1.7
PRE9YGR135W REC102Q02721 264 aa4.42□□□□□ -1.7
PRE9YGR135W PLB2Q03674 706 aa4.42□□□□□ -1.7
PRE9YGR135W YMR155WQ03795 547 aa4.42□□□□□ -1.7
PRE9YGR135W RXT3Q07458 294 aa4.42□□□□□ -1.7
PRE9YGR135W GPN2Q08726 347 aaPredicted RBP4.42□□□□□ -1.7
PRE9YGR135W GPB1Q08886 897 aa4.42□□□□□ -1.7
PRE9YGR135W YPL216WQ08964 1102 aa4.42□□□□□ -1.7
PRE9YGR135W NBP2Q12163 236 aa4.42□□□□□ -1.7
PRE9YGR135W TUS1Q06412 1307 aa4.42□□□□□ -1.7
PRE9YGR135W GCN4P03069 281 aa4.41□□□□□ -1.7
PRE9YGR135W ARG3P05150 338 aa4.41□□□□□ -1.7
PRE9YGR135W MET17P06106 444 aa4.41□□□□□ -1.7
PRE9YGR135W SEC53P07283 254 aaKnown RBP4.41□□□□□ -1.7
PRE9YGR135W TAL1P15019 335 aaKnown RBP4.41□□□□□ -1.7
PRE9YGR135W SRV2P17555 526 aaKnown RBP4.41□□□□□ -1.7
PRE9YGR135W SEC15P22224 910 aa4.41□□□□□ -1.7
PRE9YGR135W PRP22P24384 1145 aaKnown RBP4.41□□□□□ -1.7
PRE9YGR135W RPC53P25441 422 aa4.41□□□□□ -1.7
PRE9YGR135W FRD1P32614 470 aaKnown RBP4.41□□□□□ -1.7
PRE9YGR135W RCK2P38623 610 aa4.41□□□□□ -1.7
PRE9YGR135W SPL2P38839 148 aa4.41□□□□□ -1.7
PRE9YGR135W MPT5P39016 859 aaKnown RBP RIP-Chip data4.41□□□□□ -1.7not detected
PRE9YGR135W NPR2P39923 615 aa4.41□□□□□ -1.7
PRE9YGR135W TIF4631P39935 952 aaKnown RBP4.41□□□□□ -1.7
PRE9YGR135W GVP36P40531 326 aaKnown RBP4.41□□□□□ -1.7
PRE9YGR135W RPC17P47076 161 aa4.41□□□□□ -1.7
PRE9YGR135W TEL2P53038 688 aa4.41□□□□□ -1.7
PRE9YGR135W IMA1P53051 589 aa4.41□□□□□ -1.7
PRE9YGR135W DUO1P53168 247 aaKnown RBP4.41□□□□□ -1.7
PRE9YGR135W ARE2P53629 642 aaKnown RBP4.41□□□□□ -1.7
PRE9YGR135W YNL040WP53960 456 aaPredicted RBP4.41□□□□□ -1.7
PRE9YGR135W ARG5,6Q01217 863 aa4.41□□□□□ -1.7
PRE9YGR135W ARP9Q05123 467 aa4.41□□□□□ -1.7
PRE9YGR135W YDR341CQ05506 607 aaKnown RBP4.41□□□□□ -1.7
PRE9YGR135W IRC3Q06683 689 aa4.41□□□□□ -1.7
PRE9YGR135W SLK19Q08581 821 aaKnown RBP4.41□□□□□ -1.7
PRE9YGR135W GPR1Q12361 961 aa4.41□□□□□ -1.7
PRE9YGR135W SWM1Q12379 170 aa4.41□□□□□ -1.7
PRE9YGR135W CTT1P06115 562 aa4.4□□□□□ -1.71
PRE9YGR135W PDX1P16451 410 aa4.4□□□□□ -1.71
PRE9YGR135W OM45P16547 393 aa4.4□□□□□ -1.71
PRE9YGR135W OLE1P21147 510 aaKnown RBP4.4□□□□□ -1.71
PRE9YGR135W MAK31P23059 88 aa4.4□□□□□ -1.71
PRE9YGR135W YME1P32795 747 aa4.4□□□□□ -1.71
PRE9YGR135W NPL6P32832 435 aa4.4□□□□□ -1.71
PRE9YGR135W ECM4P36156 370 aa4.4□□□□□ -1.71
PRE9YGR135W GID8P40208 455 aa4.4□□□□□ -1.71
PRE9YGR135W INA22P40576 216 aa4.4□□□□□ -1.71
PRE9YGR135W MND2P40577 368 aa4.4□□□□□ -1.71
PRE9YGR135W GSM1P42950 618 aa4.4□□□□□ -1.71
PRE9YGR135W BST1P43571 1029 aa4.4□□□□□ -1.71
PRE9YGR135W RMD8P43620 662 aa4.4□□□□□ -1.71
PRE9YGR135W NMD5P46970 1048 aa4.4□□□□□ -1.71
PRE9YGR135W ATP22P50273 684 aaPredicted RBP4.4□□□□□ -1.71
PRE9YGR135W YML6P51998 286 aa4.4□□□□□ -1.71
PRE9YGR135W COG1P53079 417 aa4.4□□□□□ -1.71
PRE9YGR135W YNR061CP53747 219 aa4.4□□□□□ -1.71
PRE9YGR135W TOF1P53840 1238 aa4.4□□□□□ -1.71
PRE9YGR135W GRX3Q03835 250 aa4.4□□□□□ -1.71
PRE9YGR135W MYO5Q04439 1219 aaKnown RBP4.4□□□□□ -1.71
PRE9YGR135W ACK1Q07622 623 aaPredicted RBP4.4□□□□□ -1.71
PRE9YGR135W YBR126W-AQ8TGU7 68 aa4.4□□□□□ -1.71
PRE9YGR135W SEY1Q99287 776 aa4.4□□□□□ -1.71
PRE9YGR135W YLR415CO13578 112 aa4.39□□□□□ -1.71
PRE9YGR135W CYB2P00175 591 aa4.39□□□□□ -1.71
PRE9YGR135W TUF1P02992 437 aaKnown RBP4.39□□□□□ -1.71
PRE9YGR135W CDC24P11433 854 aaPredicted RBP4.39□□□□□ -1.71
PRE9YGR135W CLN3P13365 580 aa4.39□□□□□ -1.71
PRE9YGR135W THR4P16120 514 aaKnown RBP4.39□□□□□ -1.71
PRE9YGR135W TYR1P20049 452 aa4.39□□□□□ -1.71
PRE9YGR135W PWP1P21304 576 aaKnown RBP4.39□□□□□ -1.71
PRE9YGR135W REC107P21651 314 aa4.39□□□□□ -1.71
PRE9YGR135W CDC20P26309 610 aa4.39□□□□□ -1.71
PRE9YGR135W RPS7AP26786 190 aaKnown RBP4.39□□□□□ -1.71
PRE9YGR135W PRE4P30657 266 aa4.39□□□□□ -1.71
PRE9YGR135W SIN4P32259 974 aa4.39□□□□□ -1.71
PRE9YGR135W SMY1P32364 656 aaKnown RBP4.39□□□□□ -1.71
Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms