RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W PUT2P07275 575 aa8.04□□□□□ -1.12
UFD1YGR048W DAT1P13483 248 aaKnown RBP8.04□□□□□ -1.12
UFD1YGR048W SAR1P20606 190 aaKnown RBP8.04□□□□□ -1.12
UFD1YGR048W DBP2P24783 546 aaKnown RBP8.04□□□□□ -1.12
UFD1YGR048W KRE2P27809 442 aa8.04□□□□□ -1.12
UFD1YGR048W PET10P36139 283 aa8.04□□□□□ -1.12
UFD1YGR048W YHR045WP38775 560 aa8.04□□□□□ -1.12
UFD1YGR048W SMF2P38778 549 aa8.04□□□□□ -1.12
UFD1YGR048W NUP82P40368 713 aa8.04□□□□□ -1.12
UFD1YGR048W YIR007WP40566 764 aa8.04□□□□□ -1.12
UFD1YGR048W AGP3P43548 558 aa8.04□□□□□ -1.12
UFD1YGR048W IRC8P47046 822 aa8.04□□□□□ -1.12
UFD1YGR048W RSM26P47141 266 aa8.04□□□□□ -1.12
UFD1YGR048W ORC5P50874 479 aa8.04□□□□□ -1.12
UFD1YGR048W RPS15Q01855 142 aaKnown RBP8.04□□□□□ -1.12
UFD1YGR048W MAK10Q02197 733 aa8.04□□□□□ -1.12
UFD1YGR048W FOX2Q02207 900 aaKnown RBP8.04□□□□□ -1.12
UFD1YGR048W SSY1Q03770 852 aa8.04□□□□□ -1.12
UFD1YGR048W YET2Q04210 160 aa8.04□□□□□ -1.12
UFD1YGR048W SEG1Q04279 960 aa8.04□□□□□ -1.12
UFD1YGR048W YNG1Q08465 219 aa8.04□□□□□ -1.12
UFD1YGR048W WRS1Q12109 432 aaKnown RBP8.04□□□□□ -1.12
UFD1YGR048W RRD2Q12461 358 aa8.04□□□□□ -1.12
UFD1YGR048W COX4P04037 155 aa8.03□□□□□ -1.12
UFD1YGR048W MET17P06106 444 aa8.03□□□□□ -1.12
UFD1YGR048W STE12P13574 688 aa8.03□□□□□ -1.12
UFD1YGR048W GRX2P17695 143 aaKnown RBP8.03□□□□□ -1.12
UFD1YGR048W PMA2P19657 947 aa8.03□□□□□ -1.12
UFD1YGR048W CWH43P25618 953 aa8.03□□□□□ -1.12
UFD1YGR048W SBA1P28707 216 aaKnown RBP8.03□□□□□ -1.12
UFD1YGR048W CAM1P29547 415 aaKnown RBP8.03□□□□□ -1.12
UFD1YGR048W IRE1P32361 1115 aa8.03□□□□□ -1.12
UFD1YGR048W RTG2P32608 588 aaKnown RBP8.03□□□□□ -1.12
UFD1YGR048W UTR2P32623 467 aa8.03□□□□□ -1.12
UFD1YGR048W YSC84P32793 468 aa8.03□□□□□ -1.12
UFD1YGR048W CYM1P32898 989 aa8.03□□□□□ -1.12
UFD1YGR048W CTP1P38152 299 aa8.03□□□□□ -1.12
UFD1YGR048W IMD2P38697 523 aaKnown RBP8.03□□□□□ -1.12
UFD1YGR048W RRP8P38961 392 aaKnown RBP8.03□□□□□ -1.12
UFD1YGR048W ACO2P39533 789 aa8.03□□□□□ -1.12
UFD1YGR048W SEN34P39707 275 aa8.03□□□□□ -1.12
UFD1YGR048W EXO1P39875 702 aa8.03□□□□□ -1.12
UFD1YGR048W EMP65P40085 556 aa8.03□□□□□ -1.12
UFD1YGR048W MAD3P47074 515 aa8.03□□□□□ -1.12
UFD1YGR048W RAD17P48581 401 aa8.03□□□□□ -1.12
UFD1YGR048W LYS4P49367 693 aaPredicted RBP8.03□□□□□ -1.12
UFD1YGR048W YGR125WP53273 1036 aa8.03□□□□□ -1.12
UFD1YGR048W BIO4P53630 237 aa8.03□□□□□ -1.12
UFD1YGR048W NPL3Q01560 414 aaKnown RBP RIP-Chip data8.03□□□□□ -1.12not detected
UFD1YGR048W RSN1Q03516 953 aa8.03□□□□□ -1.12
UFD1YGR048W EAF1Q06337 982 aa8.03□□□□□ -1.12
UFD1YGR048W YDL124WQ07551 312 aaKnown RBP8.03□□□□□ -1.12
UFD1YGR048W RSC58Q07979 502 aa8.03□□□□□ -1.12
UFD1YGR048W THI20Q08224 551 aa8.03□□□□□ -1.12
UFD1YGR048W PGC1Q08959 321 aa8.03□□□□□ -1.12
UFD1YGR048W MED11Q99278 115 aa8.03□□□□□ -1.12
UFD1YGR048W GAL10P04397 699 aa8.02□□□□□ -1.13
UFD1YGR048W TPK3P05986 398 aa8.02□□□□□ -1.13
UFD1YGR048W WHI2P12611 486 aa8.02□□□□□ -1.13
UFD1YGR048W RDS2P19541 446 aaKnown RBP8.02□□□□□ -1.13
UFD1YGR048W SAC1P32368 623 aaKnown RBP8.02□□□□□ -1.13
UFD1YGR048W MUD1P32605 298 aaKnown RBP8.02□□□□□ -1.13
UFD1YGR048W UGP1P32861 499 aaKnown RBP8.02□□□□□ -1.13
UFD1YGR048W ECM13P38195 257 aa8.02□□□□□ -1.13
UFD1YGR048W SOK1P40317 901 aa8.02□□□□□ -1.13
UFD1YGR048W HPM1P40481 377 aa8.02□□□□□ -1.13
UFD1YGR048W PIP2P52960 996 aa8.02□□□□□ -1.13
UFD1YGR048W GET1P53192 235 aa8.02□□□□□ -1.13
UFD1YGR048W GOR1P53839 350 aa8.02□□□□□ -1.13
UFD1YGR048W TEP1P53916 434 aa8.02□□□□□ -1.13
UFD1YGR048W YMR010WQ03687 405 aa8.02□□□□□ -1.13
UFD1YGR048W ATG16Q03818 150 aa8.02□□□□□ -1.13
UFD1YGR048W SPO20Q04359 397 aa8.02□□□□□ -1.13
UFD1YGR048W RSB1Q08417 382 aa8.02□□□□□ -1.13
UFD1YGR048W SKI7Q08491 747 aaPredicted RBP8.02□□□□□ -1.13
UFD1YGR048W THI21Q08975 551 aa8.02□□□□□ -1.13
UFD1YGR048W YPR022CQ12139 1133 aa8.02□□□□□ -1.13
UFD1YGR048W WTM2Q12206 467 aa8.02□□□□□ -1.13
UFD1YGR048W TSC13Q99190 310 aa8.02□□□□□ -1.13
UFD1YGR048W PMS1P14242 873 aa8.01□□□□□ -1.13
UFD1YGR048W FBA1P14540 359 aaKnown RBP8.01□□□□□ -1.13
UFD1YGR048W CBS2P14905 389 aa8.01□□□□□ -1.13
UFD1YGR048W SFL1P20134 766 aa8.01□□□□□ -1.13
UFD1YGR048W CHA1P25379 360 aaKnown RBP8.01□□□□□ -1.13
UFD1YGR048W LEU5P38702 357 aa8.01□□□□□ -1.13
UFD1YGR048W SBE22P38814 852 aa8.01□□□□□ -1.13
UFD1YGR048W PHM8P40025 321 aa8.01□□□□□ -1.13
UFD1YGR048W RTT101P47050 842 aa8.01□□□□□ -1.13
UFD1YGR048W HOC1P47124 396 aa8.01□□□□□ -1.13
UFD1YGR048W SAP4P53036 818 aa8.01□□□□□ -1.13
UFD1YGR048W YGR111WP53265 400 aa8.01□□□□□ -1.13
UFD1YGR048W SOL4P53315 255 aa8.01□□□□□ -1.13
UFD1YGR048W YNR029CP53729 429 aaKnown RBP8.01□□□□□ -1.13
UFD1YGR048W EGD1Q02642 157 aaKnown RBP8.01□□□□□ -1.13
UFD1YGR048W YMR099CQ03161 297 aaKnown RBP8.01□□□□□ -1.13
UFD1YGR048W PFA5Q03289 374 aa8.01□□□□□ -1.13
UFD1YGR048W TVP15Q03860 143 aa8.01□□□□□ -1.13
UFD1YGR048W YLR352WQ06479 807 aa8.01□□□□□ -1.13
UFD1YGR048W ARV1Q06541 321 aa8.01□□□□□ -1.13
UFD1YGR048W TCO89Q08921 799 aa8.01□□□□□ -1.13
Retrieved 100 of 5,963 RNA–protein pairs in 16.7 ms