RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 CETPP11597 493 aa14.36□□□□□ -0.11
LINC00339-213ENST00000642137 SMARCA1P28370 1054 aa14.36□□□□□ -0.11
LINC00339-213ENST00000642137 KIF5BP33176 963 aa14.36□□□□□ -0.11
LINC00339-213ENST00000642137 METAP2P50579 478 aaKnown RBP eCLIP14.36□□□□□ -0.11
LINC00339-213ENST00000642137 INHBEP58166 350 aa14.36□□□□□ -0.11
LINC00339-213ENST00000642137 ZNF543Q08ER8 600 aa14.36□□□□□ -0.11
LINC00339-213ENST00000642137 NOL8Q76FK4 1167 aaKnown RBP14.36□□□□□ -0.11
LINC00339-213ENST00000642137 LZTS2Q9BRK4 669 aa14.36□□□□□ -0.11
LINC00339-213ENST00000642137 FAM217BQ9NTX9 383 aaPredicted RBP14.36□□□□□ -0.11
LINC00339-213ENST00000642137 MAD2L2Q9UI95 211 aa14.36□□□□□ -0.11
LINC00339-213ENST00000642137 MANSC4A6NHS7 340 aaPredicted RBP14.35□□□□□ -0.11
LINC00339-213ENST00000642137 GOLGA8AA7E2F4 631 aa14.35□□□□□ -0.11
LINC00339-213ENST00000642137 GOLGA8BA8MQT2 603 aa14.35□□□□□ -0.11
LINC00339-213ENST00000642137 HOXA7P31268 230 aaPredicted RBP14.35□□□□□ -0.11
LINC00339-213ENST00000642137 C1QTNF8P60827 252 aa14.35□□□□□ -0.11
LINC00339-213ENST00000642137 CCT2P78371 535 aaKnown RBP14.35□□□□□ -0.11
LINC00339-213ENST00000642137 MOGSQ13724 837 aa14.35□□□□□ -0.11
LINC00339-213ENST00000642137 RTN1Q16799 776 aa14.35□□□□□ -0.11
LINC00339-213ENST00000642137 BTNL9Q6UXG8 535 aa14.35□□□□□ -0.11
LINC00339-213ENST00000642137 MICU3Q86XE3 530 aa14.35□□□□□ -0.11
LINC00339-213ENST00000642137 SPICE1Q8N0Z3 855 aa14.35□□□□□ -0.11
LINC00339-213ENST00000642137 CHURC1Q8WUH1 139 aa14.35□□□□□ -0.11
LINC00339-213ENST00000642137 TMX3Q96JJ7 454 aa14.35□□□□□ -0.11
LINC00339-213ENST00000642137 MTMR7Q9Y216 660 aa14.35□□□□□ -0.11
LINC00339-213ENST00000642137 RBM19Q9Y4C8 960 aaKnown RBP14.35□□□□□ -0.11
LINC00339-213ENST00000642137 USP17L15C9J2P7 530 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 USP17L13C9JLJ4 530 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 USP17L11C9JVI0 530 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 USP17L18D6R9N7 530 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 USP17L22D6RA61 530 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 USP17L17D6RBQ6 530 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 USP17L19D6RCP7 530 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 USP17L20D6RJB6 530 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 K7ELQ4 463 aaPredicted RBP14.34□□□□□ -0.11
LINC00339-213ENST00000642137 DHX16O60231 1041 aaKnown RBP14.34□□□□□ -0.11
LINC00339-213ENST00000642137 LARGE1O95461 756 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 VCAM1P19320 739 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 RXRAP19793 462 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 CDC27P30260 824 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 ADD1P35611 737 aaKnown RBP14.34□□□□□ -0.11
LINC00339-213ENST00000642137 USP17L24Q0WX57 530 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 SCRN1Q12765 414 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 STK3Q13188 491 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 FAM83BQ5T0W9 1011 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 GADL1Q6ZQY3 521 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 CATSPERGQ6ZRH7 1159 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 KCTD1Q719H9 257 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 FAM160B2Q86V87 743 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 RAB11FIP4Q86YS3 637 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 HSCBQ8IWL3 235 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 CCDC144CPQ8IYA2 1237 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 STAG2Q8N3U4 1231 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 RPAP3Q9H6T3 665 aaPredicted RBP14.34□□□□□ -0.11
LINC00339-213ENST00000642137 GPCPD1Q9NPB8 672 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 FEM1BQ9UK73 627 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 AGTPBP1Q9UPW5 1226 aa14.34□□□□□ -0.11
LINC00339-213ENST00000642137 CCL15-CCL14A0A0B4J2E2 113 aa14.33□□□□□ -0.12
LINC00339-213ENST00000642137 TMEM232C9JQI7 657 aa14.33□□□□□ -0.12
LINC00339-213ENST00000642137 KLRF2D3W0D1 207 aa14.33□□□□□ -0.12
LINC00339-213ENST00000642137 MKRN3Q13064 507 aaKnown RBP14.33□□□□□ -0.12
LINC00339-213ENST00000642137 PABPC4Q13310 644 aaKnown RBP eCLIP14.33□□□□□ -0.12
LINC00339-213ENST00000642137 DGKZQ13574 1117 aa14.33□□□□□ -0.12
LINC00339-213ENST00000642137 BECN1Q14457 450 aa14.33□□□□□ -0.12
LINC00339-213ENST00000642137 CCL15Q16663 113 aa14.33□□□□□ -0.12
LINC00339-213ENST00000642137 CCDC96Q2M329 555 aa14.33□□□□□ -0.12
LINC00339-213ENST00000642137 CYP4F22Q6NT55 531 aa14.33□□□□□ -0.12
LINC00339-213ENST00000642137 GPAT2Q6NUI2 795 aa14.33□□□□□ -0.12
LINC00339-213ENST00000642137 REM2Q8IYK8 340 aaPredicted RBP14.33□□□□□ -0.12
LINC00339-213ENST00000642137 GTF3C6Q969F1 213 aa14.33□□□□□ -0.12
LINC00339-213ENST00000642137 NUP88Q99567 741 aaPredicted RBP14.33□□□□□ -0.12
LINC00339-213ENST00000642137 SLC45A1Q9Y2W3 748 aa14.33□□□□□ -0.12
LINC00339-213ENST00000642137 FRMPD2Q68DX3 1309 aaPredicted RBP14.33□□□□□ -0.12
LINC00339-213ENST00000642137 GOLGA8HP0CJ92 632 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 HSPA6P17066 643 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 TM4SF4P48230 202 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 NOGQ13253 232 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 CUL4AQ13619 759 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 COG2Q14746 738 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 NTRK3Q16288 839 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 TREML2Q5T2D2 321 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 TTBK2Q6IQ55 1244 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 CPLX2Q6PUV4 134 aaKnown RBP14.32□□□□□ -0.12
LINC00339-213ENST00000642137 PAXIP1Q6ZW49 1069 aaPredicted RBP14.32□□□□□ -0.12
LINC00339-213ENST00000642137 TMTC3Q6ZXV5 915 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 ANKRD23Q86SG2 305 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 SRBD1Q8N5C6 995 aaKnown RBP14.32□□□□□ -0.12
LINC00339-213ENST00000642137 NECAB1Q8N987 351 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 PRPF38AQ8NAV1 312 aaKnown RBP14.32□□□□□ -0.12
LINC00339-213ENST00000642137 BRI3BPQ8WY22 251 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 CAPNS2Q96L46 248 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 LLPHQ9BRT6 129 aaKnown RBP14.32□□□□□ -0.12
LINC00339-213ENST00000642137 UBA5Q9GZZ9 404 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 RIOX1Q9H6W3 641 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 HOXC10Q9NYD6 342 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 LOC285556D6RIA3 1793 aa14.32□□□□□ -0.12
LINC00339-213ENST00000642137 BTBD19C9JJ37 291 aa14.31□□□□□ -0.12
LINC00339-213ENST00000642137 CPLX1O14810 134 aa14.31□□□□□ -0.12
LINC00339-213ENST00000642137 FDX1P10109 184 aa14.31□□□□□ -0.12
LINC00339-213ENST00000642137 IFNAR1P17181 557 aa14.31□□□□□ -0.12
LINC00339-213ENST00000642137 OSBPP22059 807 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms