RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 DPP9Q86TI2 863 aa16.65■□□□□ 0.26
LINC00339-211ENST00000641009 NCAPG2Q86XI2 1143 aa16.65■□□□□ 0.26
LINC00339-211ENST00000641009 C7orf61Q8IZ16 206 aa16.65■□□□□ 0.26
LINC00339-211ENST00000641009 SHCBP1Q8NEM2 672 aa16.65■□□□□ 0.26
LINC00339-211ENST00000641009 FSD1Q9BTV5 496 aa16.65■□□□□ 0.26
LINC00339-211ENST00000641009 PRO3102Q9H379 93 aa16.65■□□□□ 0.26
LINC00339-211ENST00000641009 GOPCQ9HD26 462 aa16.65■□□□□ 0.26
LINC00339-211ENST00000641009 PCDH10Q9P2E7 1040 aa16.65■□□□□ 0.26
LINC00339-211ENST00000641009 STRNO43815 780 aa16.64■□□□□ 0.25
LINC00339-211ENST00000641009 CNGA1P29973 690 aa16.64■□□□□ 0.25
LINC00339-211ENST00000641009 TMEM132BQ14DG7 1078 aa16.64■□□□□ 0.25
LINC00339-211ENST00000641009 LRRFIP1Q32MZ4 808 aaKnown RBP16.64■□□□□ 0.25
LINC00339-211ENST00000641009 FAM83BQ5T0W9 1011 aa16.64■□□□□ 0.25
LINC00339-211ENST00000641009 YTHDC1Q96MU7 727 aaKnown RBP16.64■□□□□ 0.25
LINC00339-211ENST00000641009 SALL3Q9BXA9 1300 aa16.64■□□□□ 0.25
LINC00339-211ENST00000641009 PATL2C9JE40 543 aaKnown RBP16.63■□□□□ 0.25
LINC00339-211ENST00000641009 PRDM1O75626 825 aa16.63■□□□□ 0.25
LINC00339-211ENST00000641009 ANKRD45Q5TZF3 282 aa16.63■□□□□ 0.25
LINC00339-211ENST00000641009 IFNL3Q8IZI9 196 aa16.63■□□□□ 0.25
LINC00339-211ENST00000641009 NUP88Q99567 741 aaPredicted RBP16.63■□□□□ 0.25
LINC00339-211ENST00000641009 MROH8Q9H579 483 aa16.63■□□□□ 0.25
LINC00339-211ENST00000641009 ADAMTS5Q9UNA0 930 aa16.63■□□□□ 0.25
LINC00339-211ENST00000641009 COBLO75128 1261 aa16.62■□□□□ 0.25
LINC00339-211ENST00000641009 IGHA2P01877 340 aa16.62■□□□□ 0.25
LINC00339-211ENST00000641009 TRPV1Q8NER1 839 aa16.62■□□□□ 0.25
LINC00339-211ENST00000641009 STAP2Q9UGK3 403 aa16.62■□□□□ 0.25
LINC00339-211ENST00000641009 PPP1R9AQ9ULJ8 1098 aa16.62■□□□□ 0.25
LINC00339-211ENST00000641009 ZMYND8Q9ULU4 1186 aaPredicted RBP16.62■□□□□ 0.25
LINC00339-211ENST00000641009 MCM3APO60318 1980 aa16.62■□□□□ 0.25
LINC00339-211ENST00000641009 VWA5AO00534 786 aa16.61■□□□□ 0.25
LINC00339-211ENST00000641009 COL6A1P12109 1028 aa16.61■□□□□ 0.25
LINC00339-211ENST00000641009 ZMYM1Q5SVZ6 1142 aa16.61■□□□□ 0.25
LINC00339-211ENST00000641009 NYAP2Q9P242 653 aa16.61■□□□□ 0.25
LINC00339-211ENST00000641009 DDX20Q9UHI6 824 aaKnown RBP16.61■□□□□ 0.25
LINC00339-211ENST00000641009 IGKV6D-41A0A0C4DH26 115 aa16.61■□□□□ 0.25
LINC00339-211ENST00000641009 F5H6K3 240 aa16.61■□□□□ 0.25
LINC00339-211ENST00000641009 CYBAP13498 195 aa16.61■□□□□ 0.25
LINC00339-211ENST00000641009 KLRC3Q07444 240 aa16.61■□□□□ 0.25
LINC00339-211ENST00000641009 OLFML2BQ68BL8 750 aa16.61■□□□□ 0.25
LINC00339-211ENST00000641009 ZNF444Q8N0Y2 327 aaPredicted RBP16.61■□□□□ 0.25
LINC00339-211ENST00000641009 ABRAQ8N0Z2 381 aa16.61■□□□□ 0.25
LINC00339-211ENST00000641009 NACAP1Q9BZK3 213 aa16.61■□□□□ 0.25
LINC00339-211ENST00000641009 CLIP2Q9UDT6 1046 aa16.61■□□□□ 0.25
LINC00339-211ENST00000641009 ZBTB47Q9UFB7 747 aaPredicted RBP16.61■□□□□ 0.25
LINC00339-211ENST00000641009 SLC25A27O95847 323 aa16.6■□□□□ 0.25
LINC00339-211ENST00000641009 NDUFB10O96000 172 aa16.6■□□□□ 0.25
LINC00339-211ENST00000641009 FCER1AP12319 257 aa16.6■□□□□ 0.25
LINC00339-211ENST00000641009 SYN1P17600 705 aa16.6■□□□□ 0.25
LINC00339-211ENST00000641009 CCDC129Q6ZRS4 1044 aa16.6■□□□□ 0.25
LINC00339-211ENST00000641009 REPS2Q8NFH8 660 aa16.6■□□□□ 0.25
LINC00339-211ENST00000641009 CEP95Q96GE4 821 aa16.6■□□□□ 0.25
LINC00339-211ENST00000641009 NAPBQ9H115 298 aa16.6■□□□□ 0.25
LINC00339-211ENST00000641009 ZNF287Q9HBT7 754 aa16.6■□□□□ 0.25
LINC00339-211ENST00000641009 ZNF214Q9UL59 606 aaPredicted RBP16.6■□□□□ 0.25
LINC00339-211ENST00000641009 MSCO60682 206 aa16.59■□□□□ 0.25
LINC00339-211ENST00000641009 STAT3P40763 770 aa16.59■□□□□ 0.25
LINC00339-211ENST00000641009 HDAC1Q13547 482 aaPredicted RBP16.59■□□□□ 0.25
LINC00339-211ENST00000641009 LRRC26Q2I0M4 334 aa16.59■□□□□ 0.25
LINC00339-211ENST00000641009 ANO1Q5XXA6 986 aa16.59■□□□□ 0.25
LINC00339-211ENST00000641009 RIOX2Q8IUF8 465 aa16.59■□□□□ 0.25
LINC00339-211ENST00000641009 MAML3Q96JK9 1138 aa16.59■□□□□ 0.25
LINC00339-211ENST00000641009 MMP19Q99542 508 aa16.59■□□□□ 0.25
LINC00339-211ENST00000641009 SLF1Q9BQI6 1058 aa16.59■□□□□ 0.25
LINC00339-211ENST00000641009 SLC5A4Q9NY91 659 aa16.59■□□□□ 0.25
LINC00339-211ENST00000641009 MTMR4Q9NYA4 1195 aa16.59■□□□□ 0.25
LINC00339-211ENST00000641009 COL6A3P12111 3177 aa16.58■□□□□ 0.25
LINC00339-211ENST00000641009 FOXP2O15409 715 aa16.58■□□□□ 0.24
LINC00339-211ENST00000641009 PGK2P07205 417 aa16.58■□□□□ 0.24
LINC00339-211ENST00000641009 PPARAQ07869 468 aa16.58■□□□□ 0.24
LINC00339-211ENST00000641009 FAM47AQ5JRC9 791 aa16.58■□□□□ 0.24
LINC00339-211ENST00000641009 PRAMEF19Q5SWL8 479 aa16.58■□□□□ 0.24
LINC00339-211ENST00000641009 LRRC47Q8N1G4 583 aaKnown RBP16.58■□□□□ 0.24
LINC00339-211ENST00000641009 PLIN4Q96Q06 1357 aa16.58■□□□□ 0.24
LINC00339-211ENST00000641009 TSPY3P0CV98 308 aa16.57■□□□□ 0.24
LINC00339-211ENST00000641009 TSPY8P0CW00 308 aa16.57■□□□□ 0.24
LINC00339-211ENST00000641009 PDE1AP54750 535 aa16.57■□□□□ 0.24
LINC00339-211ENST00000641009 PDE4BQ07343 736 aa16.57■□□□□ 0.24
LINC00339-211ENST00000641009 GDF15Q99988 308 aa16.57■□□□□ 0.24
LINC00339-211ENST00000641009 SENP6Q9GZR1 1112 aaPredicted RBP16.57■□□□□ 0.24
LINC00339-211ENST00000641009 TTLL1O95922 423 aa16.56■□□□□ 0.24
LINC00339-211ENST00000641009 TFAP4Q01664 338 aa16.56■□□□□ 0.24
LINC00339-211ENST00000641009 GJC2Q5T442 439 aaPredicted RBP16.56■□□□□ 0.24
LINC00339-211ENST00000641009 NEDD1Q8NHV4 660 aa16.56■□□□□ 0.24
LINC00339-211ENST00000641009 MKL1Q969V6 931 aa16.56■□□□□ 0.24
LINC00339-211ENST00000641009 EVI5LQ96CN4 794 aa16.56■□□□□ 0.24
LINC00339-211ENST00000641009 A0A1W2PPC1 479 aa16.55■□□□□ 0.24
LINC00339-211ENST00000641009 DNM1LO00429 736 aa16.55■□□□□ 0.24
LINC00339-211ENST00000641009 SEPT4O43236 478 aa16.55■□□□□ 0.24
LINC00339-211ENST00000641009 SLC3A2P08195 630 aaKnown RBP16.55■□□□□ 0.24
LINC00339-211ENST00000641009 CTDSPL2Q05D32 466 aa16.55■□□□□ 0.24
LINC00339-211ENST00000641009 KCTD2Q14681 263 aa16.55■□□□□ 0.24
LINC00339-211ENST00000641009 VPS53Q5VIR6 699 aa16.55■□□□□ 0.24
LINC00339-211ENST00000641009 SNRNP48Q6IEG0 339 aaKnown RBP16.55■□□□□ 0.24
LINC00339-211ENST00000641009 PRPF38AQ8NAV1 312 aaKnown RBP16.55■□□□□ 0.24
LINC00339-211ENST00000641009 KIFC2Q96AC6 838 aa16.55■□□□□ 0.24
LINC00339-211ENST00000641009 LNPKQ9C0E8 428 aa16.55■□□□□ 0.24
LINC00339-211ENST00000641009 INCENPQ9NQS7 918 aa16.55■□□□□ 0.24
LINC00339-211ENST00000641009 RIPK3Q9Y572 518 aa16.55■□□□□ 0.24
LINC00339-211ENST00000641009 LTBP2Q14767 1821 aa16.55■□□□□ 0.24
LINC00339-211ENST00000641009 COPB2P35606 906 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms