RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 ZNF365Q70YC5 407 aa19.93■□□□□ 0.78
CLN3-264ENST00000637985 NCAPG2Q86XI2 1143 aa19.93■□□□□ 0.78
CLN3-264ENST00000637985 NUP133Q8WUM0 1156 aa19.93■□□□□ 0.78
CLN3-264ENST00000637985 CABP5Q9NP86 173 aa19.93■□□□□ 0.78
CLN3-264ENST00000637985 MUC6Q6W4X9 2439 aa19.92■□□□□ 0.78
CLN3-264ENST00000637985 A0A1W2PRG0 241 aa19.92■□□□□ 0.78
CLN3-264ENST00000637985 CYP2E1P05181 493 aaPredicted RBP19.92■□□□□ 0.78
CLN3-264ENST00000637985 ZNF865P0CJ78 1059 aaPredicted RBP19.92■□□□□ 0.78
CLN3-264ENST00000637985 AKR1A1P14550 325 aa19.92■□□□□ 0.78
CLN3-264ENST00000637985 SHMT1P34896 483 aa19.92■□□□□ 0.78
CLN3-264ENST00000637985 MTX1Q13505 466 aa19.92■□□□□ 0.78
CLN3-264ENST00000637985 PLS1Q14651 629 aa19.92■□□□□ 0.78
CLN3-264ENST00000637985 CCSAPQ6IQ19 270 aaPredicted RBP19.92■□□□□ 0.78
CLN3-264ENST00000637985 PSRC1Q6PGN9 363 aaPredicted RBP19.92■□□□□ 0.78
CLN3-264ENST00000637985 LENG1Q96BZ8 264 aaPredicted RBP19.92■□□□□ 0.78
CLN3-264ENST00000637985 MEIS3Q99687 375 aa19.92■□□□□ 0.78
CLN3-264ENST00000637985 TINF2Q9BSI4 451 aa19.92■□□□□ 0.78
CLN3-264ENST00000637985 TANGO6Q9C0B7 1094 aa19.92■□□□□ 0.78
CLN3-264ENST00000637985 NKX2-4Q9H2Z4 354 aa19.92■□□□□ 0.78
CLN3-264ENST00000637985 MYO5AQ9Y4I1 1855 aaKnown RBP19.92■□□□□ 0.78
CLN3-264ENST00000637985 MOXD2PA6NHM9 499 aa19.91■□□□□ 0.78
CLN3-264ENST00000637985 ACRP10323 421 aa19.91■□□□□ 0.78
CLN3-264ENST00000637985 DSG3P32926 999 aa19.91■□□□□ 0.78
CLN3-264ENST00000637985 CDK7P50613 346 aa19.91■□□□□ 0.78
CLN3-264ENST00000637985 KCNQ1P51787 676 aa19.91■□□□□ 0.78
CLN3-264ENST00000637985 SEPT2Q15019 361 aa19.91■□□□□ 0.78
CLN3-264ENST00000637985 TMEM199Q8N511 208 aa19.91■□□□□ 0.78
CLN3-264ENST00000637985 KLHDC9Q8NEP7 349 aa19.91■□□□□ 0.78
CLN3-264ENST00000637985 HERVK_113Q902F9 699 aa19.91■□□□□ 0.78
CLN3-264ENST00000637985 SLC28A3Q9HAS3 691 aa19.91■□□□□ 0.78
CLN3-264ENST00000637985 YBX2Q9Y2T7 364 aaKnown RBP19.91■□□□□ 0.78
CLN3-264ENST00000637985 GBF1Q92538 1859 aa19.9■□□□□ 0.78
CLN3-264ENST00000637985 GNAI3P08754 354 aa19.9■□□□□ 0.78
CLN3-264ENST00000637985 HNRNPUQ00839 825 aaKnown RBP eCLIP19.9■□□□□ 0.78
CLN3-264ENST00000637985 TMEM31Q5JXX7 168 aa19.9■□□□□ 0.78
CLN3-264ENST00000637985 TTC6Q86TZ1 520 aa19.9■□□□□ 0.78
CLN3-264ENST00000637985 DIS3Q9Y2L1 958 aaKnown RBP19.9■□□□□ 0.78
CLN3-264ENST00000637985 MROH7Q68CQ1 1323 aa19.9■□□□□ 0.78
CLN3-264ENST00000637985 TRANK1O15050 2925 aa19.89■□□□□ 0.78
CLN3-264ENST00000637985 ERC2O15083 957 aa19.89■□□□□ 0.77
CLN3-264ENST00000637985 ELP1O95163 1332 aa19.89■□□□□ 0.77
CLN3-264ENST00000637985 PGK2P07205 417 aa19.89■□□□□ 0.77
CLN3-264ENST00000637985 USP5P45974 858 aa19.89■□□□□ 0.77
CLN3-264ENST00000637985 KCNA10Q16322 511 aa19.89■□□□□ 0.77
CLN3-264ENST00000637985 ZNF792Q3KQV3 632 aa19.89■□□□□ 0.77
CLN3-264ENST00000637985 KIAA1755Q5JYT7 1200 aa19.89■□□□□ 0.77
CLN3-264ENST00000637985 SYNRGQ9UMZ2 1314 aa19.89■□□□□ 0.77
CLN3-264ENST00000637985 ATG4CQ96DT6 458 aa19.88■□□□□ 0.77
CLN3-264ENST00000637985 MMP19Q99542 508 aa19.88■□□□□ 0.77
CLN3-264ENST00000637985 BCAR3O75815 825 aa19.87■□□□□ 0.77
CLN3-264ENST00000637985 SLC25A27O95847 323 aa19.87■□□□□ 0.77
CLN3-264ENST00000637985 TRIM27P14373 513 aa19.87■□□□□ 0.77
CLN3-264ENST00000637985 CYP7A1P22680 504 aa19.87■□□□□ 0.77
CLN3-264ENST00000637985 PLCD1P51178 756 aa19.87■□□□□ 0.77
CLN3-264ENST00000637985 TTC39AQ5SRH9 613 aa19.87■□□□□ 0.77
CLN3-264ENST00000637985 CERS3Q8IU89 383 aa19.87■□□□□ 0.77
CLN3-264ENST00000637985 GLT1D1Q96MS3 346 aa19.87■□□□□ 0.77
CLN3-264ENST00000637985 IL23AQ9NPF7 189 aa19.87■□□□□ 0.77
CLN3-264ENST00000637985 C11orf16Q9NQ32 467 aa19.87■□□□□ 0.77
CLN3-264ENST00000637985 PIH1D3Q9NQM4 214 aaKnown RBP19.87■□□□□ 0.77
CLN3-264ENST00000637985 CNPY2Q9Y2B0 182 aa19.87■□□□□ 0.77
CLN3-264ENST00000637985 PRRC2BQ5JSZ5 2229 aaKnown RBP19.86■□□□□ 0.77
CLN3-264ENST00000637985 GPR37L1O60883 481 aa19.86■□□□□ 0.77
CLN3-264ENST00000637985 FLOT1O75955 427 aa19.86■□□□□ 0.77
CLN3-264ENST00000637985 TMEM132BQ14DG7 1078 aa19.86■□□□□ 0.77
CLN3-264ENST00000637985 MICALL1Q8N3F8 863 aa19.86■□□□□ 0.77
CLN3-264ENST00000637985 MIGA1Q8NAN2 632 aa19.86■□□□□ 0.77
CLN3-264ENST00000637985 FRAT1Q92837 279 aaPredicted RBP19.86■□□□□ 0.77
CLN3-264ENST00000637985 PPP1R12CQ9BZL4 782 aa19.86■□□□□ 0.77
CLN3-264ENST00000637985 MTIF3Q9H2K0 278 aaKnown RBP19.86■□□□□ 0.77
CLN3-264ENST00000637985 MYADML2A6NDP7 307 aa19.85■□□□□ 0.77
CLN3-264ENST00000637985 CST5P28325 142 aaPredicted RBP19.85■□□□□ 0.77
CLN3-264ENST00000637985 GABPAQ06546 454 aa19.85■□□□□ 0.77
CLN3-264ENST00000637985 KCTD2Q14681 263 aa19.85■□□□□ 0.77
CLN3-264ENST00000637985 CCDC158Q5M9N0 1113 aa19.85■□□□□ 0.77
CLN3-264ENST00000637985 ALYREFQ86V81 257 aaKnown RBP19.85■□□□□ 0.77
CLN3-264ENST00000637985 FAM126BQ8IXS8 530 aa19.85■□□□□ 0.77
CLN3-264ENST00000637985 ZNF512BQ96KM6 892 aaPredicted RBP19.85■□□□□ 0.77
CLN3-264ENST00000637985 ADAMTS5Q9UNA0 930 aa19.85■□□□□ 0.77
CLN3-264ENST00000637985 PARP14Q460N5 1801 aa19.85■□□□□ 0.77
CLN3-264ENST00000637985 ARVCFO00192 962 aa19.84■□□□□ 0.77
CLN3-264ENST00000637985 DUSP11O75319 330 aaKnown RBP19.84■□□□□ 0.77
CLN3-264ENST00000637985 FGBP02675 491 aa19.84■□□□□ 0.77
CLN3-264ENST00000637985 POU3F3P20264 500 aaPredicted RBP19.84■□□□□ 0.77
CLN3-264ENST00000637985 CYP2C18P33260 490 aa19.84■□□□□ 0.77
CLN3-264ENST00000637985 ZAP70P43403 619 aa19.84■□□□□ 0.77
CLN3-264ENST00000637985 G3BP1Q13283 466 aaKnown RBP eCLIP19.84■□□□□ 0.77
CLN3-264ENST00000637985 RIOX2Q8IUF8 465 aa19.84■□□□□ 0.77
CLN3-264ENST00000637985 FAM184BQ9ULE4 1060 aa19.84■□□□□ 0.77
CLN3-264ENST00000637985 APBB1O00213 710 aa19.83■□□□□ 0.77
CLN3-264ENST00000637985 TLL1O43897 1013 aa19.83■□□□□ 0.77
CLN3-264ENST00000637985 RABGGTBP53611 331 aa19.83■□□□□ 0.77
CLN3-264ENST00000637985 SKIV2LQ15477 1246 aaKnown RBP19.83■□□□□ 0.77
CLN3-264ENST00000637985 ZKSCAN2Q63HK3 967 aa19.83■□□□□ 0.77
CLN3-264ENST00000637985 PPP2R2DQ66LE6 453 aa19.83■□□□□ 0.77
CLN3-264ENST00000637985 MSL3Q8N5Y2 521 aaKnown RBP19.83■□□□□ 0.77
CLN3-264ENST00000637985 DBNDD2Q9BQY9 259 aa19.83■□□□□ 0.77
CLN3-264ENST00000637985 GPR108Q9NPR9 543 aa19.83■□□□□ 0.77
CLN3-264ENST00000637985 COL11A1P12107 1806 aaPredicted RBP19.83■□□□□ 0.76
CLN3-264ENST00000637985 A0A0U1RQG5 324 aaPredicted RBP19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms