RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 TMTC3Q6ZXV5 915 aa21.09■□□□□ 0.97
CLN3-263ENST00000637871 GJB4Q9NTQ9 266 aa21.09■□□□□ 0.97
CLN3-263ENST00000637871 CYP2D7A0A087X1C5 515 aa21.08■□□□□ 0.97
CLN3-263ENST00000637871 LDHDQ86WU2 507 aa21.08■□□□□ 0.97
CLN3-263ENST00000637871 STK11IPQ8N1F8 1099 aa21.08■□□□□ 0.97
CLN3-263ENST00000637871 ZNF579Q8NAF0 562 aaKnown RBP21.08■□□□□ 0.97
CLN3-263ENST00000637871 DDX4Q9NQI0 724 aaKnown RBP21.08■□□□□ 0.97
CLN3-263ENST00000637871 FOCADQ5VW36 1801 aa21.08■□□□□ 0.96
CLN3-263ENST00000637871 GOLGA6L19H0YKK7 550 aa21.07■□□□□ 0.96
CLN3-263ENST00000637871 WDHD1O75717 1129 aaPredicted RBP21.07■□□□□ 0.96
CLN3-263ENST00000637871 ZNF202O95125 648 aa21.07■□□□□ 0.96
CLN3-263ENST00000637871 NDUFA8P51970 172 aa21.07■□□□□ 0.96
CLN3-263ENST00000637871 FMR1Q06787 632 aaKnown RBP eCLIP21.07■□□□□ 0.96
CLN3-263ENST00000637871 TCP10Q12799 353 aa21.07■□□□□ 0.96
CLN3-263ENST00000637871 PRAMEF18Q5VWM3 479 aa21.07■□□□□ 0.96
CLN3-263ENST00000637871 CDAN1Q8IWY9 1227 aa21.07■□□□□ 0.96
CLN3-263ENST00000637871 TEX11Q8IYF3 940 aa21.07■□□□□ 0.96
CLN3-263ENST00000637871 CEP57L1Q8IYX8 460 aa21.07■□□□□ 0.96
CLN3-263ENST00000637871 KRI1Q8N9T8 703 aaKnown RBP21.07■□□□□ 0.96
CLN3-263ENST00000637871 GLIS2Q9BZE0 524 aaPredicted RBP21.07■□□□□ 0.96
CLN3-263ENST00000637871 KIAA1468Q9P260 1216 aa21.07■□□□□ 0.96
CLN3-263ENST00000637871 HOOK1Q9UJC3 728 aaKnown RBP21.07■□□□□ 0.96
CLN3-263ENST00000637871 HPSEQ9Y251 543 aa21.07■□□□□ 0.96
CLN3-263ENST00000637871 BAZ2AQ9UIF9 1905 aaKnown RBP21.07■□□□□ 0.96
CLN3-263ENST00000637871 A0A1B0GVL5 298 aa21.07■□□□□ 0.96
CLN3-263ENST00000637871 BTBD18B2RXH4 712 aa21.07■□□□□ 0.96
CLN3-263ENST00000637871 ZFPM1Q8IX07 1006 aa21.07■□□□□ 0.96
CLN3-263ENST00000637871 ZNF444Q8N0Y2 327 aaPredicted RBP21.07■□□□□ 0.96
CLN3-263ENST00000637871 BPIFA3Q9BQP9 254 aa21.07■□□□□ 0.96
CLN3-263ENST00000637871 MKNK2Q9HBH9 465 aa21.07■□□□□ 0.96
CLN3-263ENST00000637871 CNTNAP1P78357 1384 aa21.06■□□□□ 0.96
CLN3-263ENST00000637871 PRDM1O75626 825 aa21.06■□□□□ 0.96
CLN3-263ENST00000637871 GUCY1A2P33402 732 aa21.06■□□□□ 0.96
CLN3-263ENST00000637871 KRT2P35908 639 aa21.06■□□□□ 0.96
CLN3-263ENST00000637871 SYKP43405 635 aa21.06■□□□□ 0.96
CLN3-263ENST00000637871 SLC4A8Q2Y0W8 1093 aa21.06■□□□□ 0.96
CLN3-263ENST00000637871 RESP18Q5W5W9 173 aa21.06■□□□□ 0.96
CLN3-263ENST00000637871 SARM1Q6SZW1 724 aa21.06■□□□□ 0.96
CLN3-263ENST00000637871 TGFBRAP1Q8WUH2 860 aa21.06■□□□□ 0.96
CLN3-263ENST00000637871 DCPSQ96C86 337 aaKnown RBP21.06■□□□□ 0.96
CLN3-263ENST00000637871 LZTS2Q9BRK4 669 aa21.06■□□□□ 0.96
CLN3-263ENST00000637871 PHF20Q9BVI0 1012 aa21.06■□□□□ 0.96
CLN3-263ENST00000637871 KAT14Q9H8E8 782 aa21.06■□□□□ 0.96
CLN3-263ENST00000637871 FAM198AQ9UFP1 575 aa21.06■□□□□ 0.96
CLN3-263ENST00000637871 NAV1Q8NEY1 1877 aa21.05■□□□□ 0.96
CLN3-263ENST00000637871 TRAF5O00463 557 aa21.05■□□□□ 0.96
CLN3-263ENST00000637871 PFKFB1P16118 471 aa21.05■□□□□ 0.96
CLN3-263ENST00000637871 KRT26Q7Z3Y9 468 aa21.05■□□□□ 0.96
CLN3-263ENST00000637871 MAPKAPK5Q8IW41 473 aa21.05■□□□□ 0.96
CLN3-263ENST00000637871 CCDC34Q96HJ3 373 aa21.05■□□□□ 0.96
CLN3-263ENST00000637871 DNAJC25Q9H1X3 360 aa21.05■□□□□ 0.96
CLN3-263ENST00000637871 SH3GLB2Q9NR46 395 aa21.05■□□□□ 0.96
CLN3-263ENST00000637871 FAM13BQ9NYF5 915 aa21.05■□□□□ 0.96
CLN3-263ENST00000637871 TMOD2Q9NZR1 351 aa21.05■□□□□ 0.96
CLN3-263ENST00000637871 PGAP2Q9UHJ9 254 aa21.05■□□□□ 0.96
CLN3-263ENST00000637871 PTPREP23469 700 aa21.04■□□□□ 0.96
CLN3-263ENST00000637871 TFAP4Q01664 338 aa21.04■□□□□ 0.96
CLN3-263ENST00000637871 PKN1Q16512 942 aa21.04■□□□□ 0.96
CLN3-263ENST00000637871 ZC3H15Q8WU90 426 aaKnown RBP21.04■□□□□ 0.96
CLN3-263ENST00000637871 TMEM39BQ9GZU3 492 aa21.04■□□□□ 0.96
CLN3-263ENST00000637871 V9GY48 417 aaPredicted RBP21.04■□□□□ 0.96
CLN3-263ENST00000637871 BECN2A8MW95 431 aa21.04■□□□□ 0.96
CLN3-263ENST00000637871 CALML3P27482 149 aa21.04■□□□□ 0.96
CLN3-263ENST00000637871 CDC25BP30305 580 aa21.04■□□□□ 0.96
CLN3-263ENST00000637871 TRAPPC10P48553 1259 aa21.04■□□□□ 0.96
CLN3-263ENST00000637871 IQCB1Q15051 598 aa21.04■□□□□ 0.96
CLN3-263ENST00000637871 CHADLQ6NUI6 762 aa21.04■□□□□ 0.96
CLN3-263ENST00000637871 LUZP1Q86V48 1076 aa21.04■□□□□ 0.96
CLN3-263ENST00000637871 APOBEC3FQ8IUX4 373 aaKnown RBP21.04■□□□□ 0.96
CLN3-263ENST00000637871 FLT1P17948 1338 aa21.03■□□□□ 0.96
CLN3-263ENST00000637871 PITPNM2Q9BZ72 1349 aa21.03■□□□□ 0.96
CLN3-263ENST00000637871 DDX60LQ5H9U9 1706 aaKnown RBP21.03■□□□□ 0.96
CLN3-263ENST00000637871 RASA3Q14644 834 aa21.03■□□□□ 0.96
CLN3-263ENST00000637871 KANK3Q6NY19 840 aa21.03■□□□□ 0.96
CLN3-263ENST00000637871 SULF1Q8IWU6 871 aa21.03■□□□□ 0.96
CLN3-263ENST00000637871 DEFB129Q9H1M3 183 aa21.03■□□□□ 0.96
CLN3-263ENST00000637871 SAP30BPQ9UHR5 308 aaKnown RBP21.03■□□□□ 0.96
CLN3-263ENST00000637871 TAOK2Q9UL54 1235 aa21.03■□□□□ 0.96
CLN3-263ENST00000637871 KCNJ14Q9UNX9 436 aa21.03■□□□□ 0.96
CLN3-263ENST00000637871 CYP2D6P10635 497 aa21.02■□□□□ 0.96
CLN3-263ENST00000637871 MARCKSP29966 332 aaPredicted RBP21.02■□□□□ 0.96
CLN3-263ENST00000637871 TPM4P67936 248 aa21.02■□□□□ 0.96
CLN3-263ENST00000637871 PLCB2Q00722 1185 aa21.02■□□□□ 0.96
CLN3-263ENST00000637871 GALNT17Q6IS24 598 aa21.02■□□□□ 0.96
CLN3-263ENST00000637871 RCSD1Q6JBY9 416 aa21.02■□□□□ 0.96
CLN3-263ENST00000637871 IDI2Q9BXS1 227 aa21.02■□□□□ 0.96
CLN3-263ENST00000637871 SRPRBQ9Y5M8 271 aaKnown RBP21.02■□□□□ 0.96
CLN3-263ENST00000637871 CNTNAP5Q8WYK1 1306 aa21.02■□□□□ 0.96
CLN3-263ENST00000637871 TRIM75PA6NK02 468 aa21.01■□□□□ 0.95
CLN3-263ENST00000637871 TSPY3P0CV98 308 aa21.01■□□□□ 0.95
CLN3-263ENST00000637871 TSPY8P0CW00 308 aa21.01■□□□□ 0.95
CLN3-263ENST00000637871 SLURP2P0DP57 97 aa21.01■□□□□ 0.95
CLN3-263ENST00000637871 SCG2P13521 617 aa21.01■□□□□ 0.95
CLN3-263ENST00000637871 SMARCA1P28370 1054 aa21.01■□□□□ 0.95
CLN3-263ENST00000637871 NLRP12P59046 1061 aa21.01■□□□□ 0.95
CLN3-263ENST00000637871 EVX2Q03828 476 aa21.01■□□□□ 0.95
CLN3-263ENST00000637871 PFKFB3Q16875 520 aaPredicted RBP21.01■□□□□ 0.95
CLN3-263ENST00000637871 FAM47AQ5JRC9 791 aa21.01■□□□□ 0.95
CLN3-263ENST00000637871 SHC4Q6S5L8 630 aa21.01■□□□□ 0.95
CLN3-263ENST00000637871 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms