RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 NOVP48745 357 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 ERVK-9P63128 1117 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 ERVK-24P63145 666 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 SLFN13Q68D06 897 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 LBX2Q6XYB7 198 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 ZKSCAN3Q9BRR0 538 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 KRT23Q9C075 422 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 ANO2Q9NQ90 1003 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 FBXO28Q9NVF7 368 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 BTBD7Q9P203 1132 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 SYNPO2Q9UMS6 1093 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 HPS5Q9UPZ3 1129 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 TAF6LQ9Y6J9 622 aa11.61□□□□□ -0.55
CLN3-261ENST00000637686 MYPNQ86TC9 1320 aa11.6□□□□□ -0.55
CLN3-261ENST00000637686 MGAMO43451 1857 aa11.6□□□□□ -0.55
CLN3-261ENST00000637686 TNPO2O14787 897 aaKnown RBP11.6□□□□□ -0.55
CLN3-261ENST00000637686 PRKCZQ05513 592 aa11.6□□□□□ -0.55
CLN3-261ENST00000637686 KCNB2Q92953 911 aa11.6□□□□□ -0.55
CLN3-261ENST00000637686 ATG4CQ96DT6 458 aa11.6□□□□□ -0.55
CLN3-261ENST00000637686 C22orf23Q9BZE7 217 aa11.6□□□□□ -0.55
CLN3-261ENST00000637686 CNNM2Q9H8M5 875 aa11.6□□□□□ -0.55
CLN3-261ENST00000637686 TSHZ2Q9NRE2 1034 aa11.6□□□□□ -0.55
CLN3-261ENST00000637686 ZSWIM5Q9P217 1185 aa11.6□□□□□ -0.55
CLN3-261ENST00000637686 SRRDQ9UH36 339 aa11.6□□□□□ -0.55
CLN3-261ENST00000637686 GABRQQ9UN88 632 aa11.6□□□□□ -0.55
CLN3-261ENST00000637686 MTMR7Q9Y216 660 aa11.6□□□□□ -0.55
CLN3-261ENST00000637686 PTCH2Q9Y6C5 1203 aa11.6□□□□□ -0.55
CLN3-261ENST00000637686 RLFQ13129 1914 aa11.6□□□□□ -0.55
CLN3-261ENST00000637686 CCDC85CA6NKD9 419 aa11.59□□□□□ -0.55
CLN3-261ENST00000637686 CAPN15O75808 1086 aa11.59□□□□□ -0.55
CLN3-261ENST00000637686 TOP1P11387 765 aaKnown RBP11.59□□□□□ -0.55
CLN3-261ENST00000637686 BMP3P12645 472 aa11.59□□□□□ -0.55
CLN3-261ENST00000637686 SLC1A4P43007 532 aa11.59□□□□□ -0.55
CLN3-261ENST00000637686 NT5C2P49902 561 aa11.59□□□□□ -0.55
CLN3-261ENST00000637686 PRMT2P55345 433 aa11.59□□□□□ -0.55
CLN3-261ENST00000637686 TRDNQ13061 729 aa11.59□□□□□ -0.55
CLN3-261ENST00000637686 RCSD1Q6JBY9 416 aa11.59□□□□□ -0.55
CLN3-261ENST00000637686 IQCA1Q86XH1 822 aa11.59□□□□□ -0.55
CLN3-261ENST00000637686 CCAR1Q8IX12 1150 aaKnown RBP11.59□□□□□ -0.55
CLN3-261ENST00000637686 COA7Q96BR5 231 aa11.59□□□□□ -0.55
CLN3-261ENST00000637686 TTC14Q96N46 770 aa11.59□□□□□ -0.55
CLN3-261ENST00000637686 SLF1Q9BQI6 1058 aa11.59□□□□□ -0.55
CLN3-261ENST00000637686 TMEM47Q9BQJ4 181 aa11.59□□□□□ -0.55
CLN3-261ENST00000637686 PORCNQ9H237 461 aa11.59□□□□□ -0.55
CLN3-261ENST00000637686 PPP1R9AQ9ULJ8 1098 aa11.59□□□□□ -0.55
CLN3-261ENST00000637686 ISY1Q9ULR0 285 aaKnown RBP11.59□□□□□ -0.55
CLN3-261ENST00000637686 E7EWF7 191 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 VWA5AO00534 786 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 SLC27A2O14975 620 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 HSPA4P34932 840 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 FLT3LGP49771 235 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 CCNA1P78396 465 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 PLS1Q14651 629 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 TMEM132BQ14DG7 1078 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 NECTIN1Q15223 517 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 TSGA10IPQ3SY00 556 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 RNF20Q5VTR2 975 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 STOX1Q6ZVD7 989 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 KCTD1Q719H9 257 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 CYB5R4Q7L1T6 521 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 RASGRP2Q7LDG7 609 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 DGKHQ86XP1 1220 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 MB21D1Q8N884 522 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 RAET1EQ8TD07 263 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 KIFC2Q96AC6 838 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 GMCL1Q96IK5 515 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 ZSCAN10Q96SZ4 725 aaPredicted RBP11.58□□□□□ -0.56
CLN3-261ENST00000637686 SPATC1LQ9H0A9 340 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 FEM1BQ9UK73 627 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 ADAMTS5Q9UNA0 930 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 PARP14Q460N5 1801 aa11.58□□□□□ -0.56
CLN3-261ENST00000637686 TMEM232C9JQI7 657 aa11.57□□□□□ -0.56
CLN3-261ENST00000637686 MAPK4P31152 587 aa11.57□□□□□ -0.56
CLN3-261ENST00000637686 CCDC96Q2M329 555 aa11.57□□□□□ -0.56
CLN3-261ENST00000637686 CCDC178Q5BJE1 867 aa11.57□□□□□ -0.56
CLN3-261ENST00000637686 WDR78Q5VTH9 848 aa11.57□□□□□ -0.56
CLN3-261ENST00000637686 CREB3L3Q68CJ9 461 aa11.57□□□□□ -0.56
CLN3-261ENST00000637686 GPR142Q7Z601 462 aa11.57□□□□□ -0.56
CLN3-261ENST00000637686 PLEKHH3Q7Z736 793 aa11.57□□□□□ -0.56
CLN3-261ENST00000637686 PRPF38AQ8NAV1 312 aaKnown RBP11.57□□□□□ -0.56
CLN3-261ENST00000637686 NCOA7Q8NI08 942 aa11.57□□□□□ -0.56
CLN3-261ENST00000637686 ANKS1AQ92625 1134 aa11.57□□□□□ -0.56
CLN3-261ENST00000637686 UBAC1Q9BSL1 405 aa11.57□□□□□ -0.56
CLN3-261ENST00000637686 MOV10L1Q9BXT6 1211 aaKnown RBP11.57□□□□□ -0.56
CLN3-261ENST00000637686 CWC22Q9HCG8 908 aaKnown RBP11.57□□□□□ -0.56
CLN3-261ENST00000637686 GJD2Q9UKL4 321 aa11.57□□□□□ -0.56
CLN3-261ENST00000637686 TNKSO95271 1327 aa11.57□□□□□ -0.56
CLN3-261ENST00000637686 DOCK3Q8IZD9 2030 aa11.57□□□□□ -0.56
CLN3-261ENST00000637686 A0A0G2JMZ2 1700 aa11.56□□□□□ -0.56
CLN3-261ENST00000637686 PDHBP11177 359 aa11.56□□□□□ -0.56
CLN3-261ENST00000637686 ERCC3P19447 782 aa11.56□□□□□ -0.56
CLN3-261ENST00000637686 STAT2P52630 851 aa11.56□□□□□ -0.56
CLN3-261ENST00000637686 IKQ13123 557 aaPredicted RBP11.56□□□□□ -0.56
CLN3-261ENST00000637686 SLC9C1Q4G0N8 1177 aa11.56□□□□□ -0.56
CLN3-261ENST00000637686 TTBK2Q6IQ55 1244 aa11.56□□□□□ -0.56
CLN3-261ENST00000637686 CHST3Q7LGC8 479 aa11.56□□□□□ -0.56
CLN3-261ENST00000637686 RALYLQ86SE5 291 aaKnown RBP11.56□□□□□ -0.56
CLN3-261ENST00000637686 ENAHQ8N8S7 591 aaPredicted RBP11.56□□□□□ -0.56
CLN3-261ENST00000637686 REPS2Q8NFH8 660 aa11.56□□□□□ -0.56
CLN3-261ENST00000637686 SH3TC2Q8TF17 1288 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms