RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 LRRC47Q8N1G4 583 aaKnown RBP12.17□□□□□ -0.46
CLN3-248ENST00000636355 STAG2Q8N3U4 1231 aa12.17□□□□□ -0.46
CLN3-248ENST00000636355 L3MBTL3Q96JM7 780 aaPredicted RBP12.17□□□□□ -0.46
CLN3-248ENST00000636355 TEPSINQ96N21 525 aa12.17□□□□□ -0.46
CLN3-248ENST00000636355 TMEM39BQ9GZU3 492 aa12.17□□□□□ -0.46
CLN3-248ENST00000636355 CEP131Q9UPN4 1083 aa12.17□□□□□ -0.46
CLN3-248ENST00000636355 A0A1W2PQ27 194 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 A0A1W2PQ64 194 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 A0A1W2PQD8 194 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 CYTH3O43739 400 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 PPP6R2O75170 966 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 LETM1O95202 739 aaPredicted RBP12.16□□□□□ -0.46
CLN3-248ENST00000636355 GH2P01242 217 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 EEF2P13639 858 aaKnown RBP12.16□□□□□ -0.46
CLN3-248ENST00000636355 LMOD1P29536 600 aaPredicted RBP12.16□□□□□ -0.46
CLN3-248ENST00000636355 CAP2P40123 477 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 FOSBP53539 338 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 ZNF445P59923 1031 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 SEPT2Q15019 361 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 ANO1Q5XXA6 986 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 OTUD7BQ6GQQ9 843 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 CMTR1Q8N1G2 835 aaKnown RBP12.16□□□□□ -0.46
CLN3-248ENST00000636355 LINC00301Q8NCQ3 95 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 BICD2Q8TD16 824 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 TNFRSF25Q93038 417 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 MTMR8Q96EF0 704 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 USP28Q96RU2 1077 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 GLT8D2Q9H1C3 349 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 GDPD2Q9HCC8 539 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 GOPCQ9HD26 462 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.16□□□□□ -0.46
CLN3-248ENST00000636355 DDX19AQ9NUU7 478 aaKnown RBP12.16□□□□□ -0.46
CLN3-248ENST00000636355 RNF181Q9P0P0 153 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 VPS54Q9P1Q0 977 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 NOL7Q9UMY1 257 aaKnown RBP12.16□□□□□ -0.46
CLN3-248ENST00000636355 PARP14Q460N5 1801 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 PHIPQ8WWQ0 1821 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 OTOFQ9HC10 1997 aa12.16□□□□□ -0.46
CLN3-248ENST00000636355 FAM196BA6NMK8 535 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 USP17L5A8MUK1 530 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 GRIN3BO60391 1043 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 PLA2G6O60733 806 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 DTNBO60941 627 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 PPFIA3O75145 1194 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 YBX3P16989 372 aaKnown RBP eCLIP12.15□□□□□ -0.46
CLN3-248ENST00000636355 GNA11P29992 359 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 ORC2Q13416 577 aaPredicted RBP12.15□□□□□ -0.46
CLN3-248ENST00000636355 SLC39A14Q15043 492 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 NPY5RQ15761 445 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 FOXD4L6Q3SYB3 417 aaPredicted RBP12.15□□□□□ -0.46
CLN3-248ENST00000636355 CCDC183Q5T5S1 534 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 CAVIN1Q6NZI2 390 aaKnown RBP12.15□□□□□ -0.46
CLN3-248ENST00000636355 FAM173BQ6P4H8 233 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 USP17L2Q6R6M4 530 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 FOXD4L3Q6VB84 417 aaPredicted RBP12.15□□□□□ -0.46
CLN3-248ENST00000636355 CCDC82Q8N4S0 544 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 CHAMP1Q96JM3 812 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 ZMYND12Q9H0C1 365 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 ADARB2Q9NS39 739 aaKnown RBP12.15□□□□□ -0.46
CLN3-248ENST00000636355 HACL1Q9UJ83 578 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 PCDHA4Q9UN74 947 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 TMX2Q9Y320 296 aa12.15□□□□□ -0.46
CLN3-248ENST00000636355 PNMA6FA0A0J9YX94 578 aa12.14□□□□□ -0.47
CLN3-248ENST00000636355 SHTN1A0MZ66 631 aa12.14□□□□□ -0.47
CLN3-248ENST00000636355 BTBD18B2RXH4 712 aa12.14□□□□□ -0.47
CLN3-248ENST00000636355 STXBP3O00186 592 aa12.14□□□□□ -0.47
CLN3-248ENST00000636355 SPTLC2O15270 562 aa12.14□□□□□ -0.47
CLN3-248ENST00000636355 CTNND1O60716 968 aaKnown RBP12.14□□□□□ -0.47
CLN3-248ENST00000636355 GDF11O95390 407 aa12.14□□□□□ -0.47
CLN3-248ENST00000636355 SLC1A4P43007 532 aa12.14□□□□□ -0.47
CLN3-248ENST00000636355 NLRP5P59047 1200 aa12.14□□□□□ -0.47
CLN3-248ENST00000636355 STK38Q15208 465 aa12.14□□□□□ -0.47
CLN3-248ENST00000636355 CCDC96Q2M329 555 aa12.14□□□□□ -0.47
CLN3-248ENST00000636355 SLC35G1Q2M3R5 365 aa12.14□□□□□ -0.47
CLN3-248ENST00000636355 TBC1D10BQ4KMP7 808 aaPredicted RBP12.14□□□□□ -0.47
CLN3-248ENST00000636355 WWC2Q6AWC2 1192 aa12.14□□□□□ -0.47
CLN3-248ENST00000636355 MCTP2Q6DN12 878 aa12.14□□□□□ -0.47
CLN3-248ENST00000636355 BTNL9Q6UXG8 535 aa12.14□□□□□ -0.47
CLN3-248ENST00000636355 DEFB129Q9H1M3 183 aa12.14□□□□□ -0.47
CLN3-248ENST00000636355 GJB4Q9NTQ9 266 aa12.14□□□□□ -0.47
CLN3-248ENST00000636355 UBE2Q2LH0YL09 131 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 ZBTB5O15062 677 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 EGFRP00533 1210 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 ZSCAN23Q3MJ62 389 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 SLFN13Q68D06 897 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 ADALQ6DHV7 355 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 CCDC73Q6ZRK6 1079 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 SAMD7Q7Z3H4 446 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 KRT25Q7Z3Z0 450 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 HEATR3Q7Z4Q2 680 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 CLEC10AQ8IUN9 316 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 SIAH1Q8IUQ4 282 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 BLIDQ8IZY5 108 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 LPAR1Q92633 364 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 SHISA4Q96DD7 197 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 ZNF341Q9BYN7 854 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 C6orf50Q9HD87 102 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 GGA3Q9NZ52 723 aa12.13□□□□□ -0.47
CLN3-248ENST00000636355 TFIP11Q9UBB9 837 aaKnown RBP12.13□□□□□ -0.47
CLN3-248ENST00000636355 KCNJ14Q9UNX9 436 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms