RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	CFAP100	Q494V2	611 aa		12.09	□□□□□ -0.47
CHD2-223	ENST00000636306	CCDC102B	Q68D86	513 aa		12.09	□□□□□ -0.47
CHD2-223	ENST00000636306	TOGARAM2	Q6ZUX3	1019 aa		12.09	□□□□□ -0.47
CHD2-223	ENST00000636306	OSBP2	Q969R2	916 aa		12.09	□□□□□ -0.47
CHD2-223	ENST00000636306	HOOK2	Q96ED9	719 aa		12.09	□□□□□ -0.47
CHD2-223	ENST00000636306	ZNF274	Q96GC6	653 aa	Predicted RBP	12.09	□□□□□ -0.47
CHD2-223	ENST00000636306	C8orf37	Q96NL8	207 aa		12.09	□□□□□ -0.47
CHD2-223	ENST00000636306	RHOXF2	Q9BQY4	288 aa		12.09	□□□□□ -0.47
CHD2-223	ENST00000636306	ZSWIM4	Q9H7M6	989 aa		12.09	□□□□□ -0.47
CHD2-223	ENST00000636306	CHD4	Q14839	1912 aa		12.08	□□□□□ -0.47
CHD2-223	ENST00000636306	TIAM2	Q8IVF5	1701 aa		12.08	□□□□□ -0.48
CHD2-223	ENST00000636306	CARMIL3	Q8ND23	1372 aa		12.08	□□□□□ -0.48
CHD2-223	ENST00000636306	GPAA1	O43292	621 aa		12.08	□□□□□ -0.48
CHD2-223	ENST00000636306	OPA1	O60313	960 aa		12.08	□□□□□ -0.48
CHD2-223	ENST00000636306	PECAM1	P16284	738 aa	Predicted RBP	12.08	□□□□□ -0.48
CHD2-223	ENST00000636306	GCK	P35557	465 aa		12.08	□□□□□ -0.48
CHD2-223	ENST00000636306	SLMAP	Q14BN4	828 aa		12.08	□□□□□ -0.48
CHD2-223	ENST00000636306	SYNE4	Q8N205	404 aa		12.08	□□□□□ -0.48
CHD2-223	ENST00000636306	FNBP4	Q8N3X1	1017 aa	Predicted RBP	12.08	□□□□□ -0.48
CHD2-223	ENST00000636306	RPGRIP1	Q96KN7	1286 aa		12.08	□□□□□ -0.48
CHD2-223	ENST00000636306	PANX2	Q96RD6	677 aa		12.08	□□□□□ -0.48
CHD2-223	ENST00000636306	DDX20	Q9UHI6	824 aa	Known RBP	12.08	□□□□□ -0.48
CHD2-223	ENST00000636306	ZNF213	O14771	459 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	EPB41	P11171	864 aa	Known RBP	12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	LMOD1	P29536	600 aa	Predicted RBP	12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	RPS6KA3	P51812	740 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	EXOSC10	Q01780	885 aa	Known RBP	12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	PARP9	Q8IXQ6	854 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	TC2N	Q8N9U0	490 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	NCOA7	Q8NI08	942 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	SMARCC2	Q8TAQ2	1214 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	RUBCN	Q92622	972 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	SAAL1	Q96ER3	474 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	RSRC1	Q96IZ7	334 aa	Known RBP	12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	NAPG	Q99747	312 aa	Predicted RBP	12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	HSD3B7	Q9H2F3	369 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	SLC40A1	Q9NP59	571 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	TAF1L	Q8IZX4	1826 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	TULP1	O00294	542 aa	Predicted RBP	12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	COQ9	O75208	318 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	GNAT2	P19087	354 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	HMGB2	P26583	209 aa	Known RBP	12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	STK3	Q13188	491 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	SCARF1	Q14162	830 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	KARS	Q15046	597 aa	Known RBP	12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	SLC9C2	Q5TAH2	1124 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	STOX1	Q6ZVD7	989 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	DPF2	Q92785	391 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	TCEANC2	Q96MN5	208 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	RTEL1	Q9NZ71	1219 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	TAF6L	Q9Y6J9	622 aa		12.07	□□□□□ -0.48
CHD2-223	ENST00000636306	MAST2	Q6P0Q8	1798 aa		12.06	□□□□□ -0.48
CHD2-223	ENST00000636306	MYH13	Q9UKX3	1938 aa		12.06	□□□□□ -0.48
CHD2-223	ENST00000636306		A0A087WWV3	80 aa		12.06	□□□□□ -0.48
CHD2-223	ENST00000636306	NDUFAB1	O14561	156 aa		12.06	□□□□□ -0.48
CHD2-223	ENST00000636306	IDH1	O75874	414 aa	Known RBP	12.06	□□□□□ -0.48
CHD2-223	ENST00000636306	GGCX	P38435	758 aa		12.06	□□□□□ -0.48
CHD2-223	ENST00000636306	ME1	P48163	572 aa		12.06	□□□□□ -0.48
CHD2-223	ENST00000636306	NAA25	Q14CX7	972 aa		12.06	□□□□□ -0.48
CHD2-223	ENST00000636306	SPATA5	Q8NB90	893 aa		12.06	□□□□□ -0.48
CHD2-223	ENST00000636306	AIDA	Q96BJ3	306 aa		12.06	□□□□□ -0.48
CHD2-223	ENST00000636306	USP28	Q96RU2	1077 aa		12.06	□□□□□ -0.48
CHD2-223	ENST00000636306	MRPL44	Q9H9J2	332 aa	Known RBP	12.06	□□□□□ -0.48
CHD2-223	ENST00000636306	TUBE1	Q9UJT0	475 aa		12.06	□□□□□ -0.48
CHD2-223	ENST00000636306	TTF2	Q9UNY4	1162 aa	Known RBP	12.06	□□□□□ -0.48
CHD2-223	ENST00000636306	AGPS	O00116	658 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	PDE6A	P16499	860 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	GBP2	P32456	591 aa	Predicted RBP	12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	PHKA1	P46020	1223 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	SF3B3	Q15393	1217 aa	Known RBP	12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	ALX1	Q15699	326 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	KLHL23	Q8NBE8	558 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	USP21	Q9UK80	565 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	PCDHA7	Q9UN72	937 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	ADGRG1	Q9Y653	693 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	SBF2	Q86WG5	1849 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	NEDD4	P46934	1319 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	ZNF202	O95125	648 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	ATP1A3	P13637	1013 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	NAP1L1	P55209	391 aa	Known RBP	12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	ZNF569	Q5MCW4	686 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	EMC10	Q5UCC4	262 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	SPECC1L	Q69YQ0	1117 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	DRAXIN	Q8NBI3	349 aa	Predicted RBP	12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	LINC00116	Q8NCU8	138 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	C3orf20	Q8ND61	904 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	KCNG4	Q8TDN1	519 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	NACAP1	Q9BZK3	213 aa		12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	MYO5A	Q9Y4I1	1855 aa	Known RBP	12.05	□□□□□ -0.48
CHD2-223	ENST00000636306	C4A	P0C0L4	1744 aa		12.04	□□□□□ -0.48
CHD2-223	ENST00000636306	C4B	P0C0L5	1744 aa		12.04	□□□□□ -0.48
CHD2-223	ENST00000636306	ZNF532	Q9HCE3	1301 aa		12.04	□□□□□ -0.48
CHD2-223	ENST00000636306	GOLGA6B	A6NDN3	693 aa		12.04	□□□□□ -0.48
CHD2-223	ENST00000636306	LIN7A	O14910	233 aa	Predicted RBP	12.04	□□□□□ -0.48
CHD2-223	ENST00000636306	PRC1	O43663	620 aa		12.04	□□□□□ -0.48
CHD2-223	ENST00000636306	RPS6KA4	O75676	772 aa		12.04	□□□□□ -0.48
CHD2-223	ENST00000636306	YEATS4	O95619	227 aa		12.04	□□□□□ -0.48
CHD2-223	ENST00000636306	FGA	P02671	866 aa		12.04	□□□□□ -0.48
CHD2-223	ENST00000636306	CHGB	P05060	677 aa		12.04	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms