RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 TANGO6Q9C0B7 1094 aa21.29■■□□□ 1
CLN3-239ENST00000628023 RNF208Q9H0X6 261 aa21.29■■□□□ 1
CLN3-239ENST00000628023 ASCC2Q9H1I8 757 aaPredicted RBP21.29■■□□□ 1
CLN3-239ENST00000628023 IL17RBQ9NRM6 502 aa21.29■■□□□ 1
CLN3-239ENST00000628023 ISY1Q9ULR0 285 aaKnown RBP21.29■■□□□ 1
CLN3-239ENST00000628023 MYH4Q9Y623 1939 aa21.29■■□□□ 1
CLN3-239ENST00000628023 CCL5P13501 91 aa21.28■■□□□ 1
CLN3-239ENST00000628023 GCLCP48506 637 aaPredicted RBP21.28■■□□□ 1
CLN3-239ENST00000628023 NECTIN1Q15223 517 aa21.28■■□□□ 1
CLN3-239ENST00000628023 CCDC178Q5BJE1 867 aa21.28■■□□□ 1
CLN3-239ENST00000628023 TCP11L1Q9NUJ3 509 aa21.28■■□□□ 1
CLN3-239ENST00000628023 TAF6LQ9Y6J9 622 aa21.28■■□□□ 1
CLN3-239ENST00000628023 MGAMO43451 1857 aa21.27■■□□□ 1
CLN3-239ENST00000628023 WDR46O15213 610 aaKnown RBP21.27■■□□□ 1
CLN3-239ENST00000628023 ADCY3O60266 1144 aa21.27■■□□□ 1
CLN3-239ENST00000628023 GJB1P08034 283 aa21.27■■□□□ 1
CLN3-239ENST00000628023 ZKSCAN1P17029 563 aaPredicted RBP21.27■■□□□ 1
CLN3-239ENST00000628023 HOXA7P31268 230 aaPredicted RBP21.27■■□□□ 1
CLN3-239ENST00000628023 FLT3LGP49771 235 aa21.27■■□□□ 1
CLN3-239ENST00000628023 ANKRD13CQ8N6S4 541 aa21.27■■□□□ 1
CLN3-239ENST00000628023 MKL1Q969V6 931 aa21.27■■□□□ 1
CLN3-239ENST00000628023 SYNPO2Q9UMS6 1093 aa21.27■■□□□ 1
CLN3-239ENST00000628023 GABRQQ9UN88 632 aa21.27■■□□□ 1
CLN3-239ENST00000628023 F5H6K3 240 aa21.26■□□□□ 0.99
CLN3-239ENST00000628023 NDUFB10O96000 172 aa21.26■□□□□ 0.99
CLN3-239ENST00000628023 GJA8P48165 433 aa21.26■□□□□ 0.99
CLN3-239ENST00000628023 KLRC3Q07444 240 aa21.26■□□□□ 0.99
CLN3-239ENST00000628023 FAM110CQ1W6H9 321 aa21.26■□□□□ 0.99
CLN3-239ENST00000628023 KIAA1755Q5JYT7 1200 aa21.26■□□□□ 0.99
CLN3-239ENST00000628023 STOX1Q6ZVD7 989 aa21.26■□□□□ 0.99
CLN3-239ENST00000628023 PXYLP1Q8TE99 480 aa21.26■□□□□ 0.99
CLN3-239ENST00000628023 ZSWIM5Q9P217 1185 aa21.26■□□□□ 0.99
CLN3-239ENST00000628023 MTMR7Q9Y216 660 aa21.26■□□□□ 0.99
CLN3-239ENST00000628023 EIF5BO60841 1220 aaKnown RBP21.25■□□□□ 0.99
CLN3-239ENST00000628023 TOP1P11387 765 aaKnown RBP21.25■□□□□ 0.99
CLN3-239ENST00000628023 IRF5Q13568 498 aa21.25■□□□□ 0.99
CLN3-239ENST00000628023 HABP4Q5JVS0 413 aaKnown RBP21.25■□□□□ 0.99
CLN3-239ENST00000628023 SAMD1Q6SPF0 538 aaPredicted RBP21.25■□□□□ 0.99
CLN3-239ENST00000628023 CATSPERGQ6ZRH7 1159 aa21.25■□□□□ 0.99
CLN3-239ENST00000628023 ZSCAN10Q96SZ4 725 aaPredicted RBP21.25■□□□□ 0.99
CLN3-239ENST00000628023 TNKSO95271 1327 aa21.25■□□□□ 0.99
CLN3-239ENST00000628023 BRCA2P51587 3418 aa21.25■□□□□ 0.99
CLN3-239ENST00000628023 ERICH2A1L162 156 aa21.24■□□□□ 0.99
CLN3-239ENST00000628023 FLOT1O75955 427 aa21.24■□□□□ 0.99
CLN3-239ENST00000628023 CAPN2P17655 700 aa21.24■□□□□ 0.99
CLN3-239ENST00000628023 HERVK_113P62684 666 aa21.24■□□□□ 0.99
CLN3-239ENST00000628023 SART3Q15020 963 aaKnown RBP21.24■□□□□ 0.99
CLN3-239ENST00000628023 FAM83BQ5T0W9 1011 aa21.24■□□□□ 0.99
CLN3-239ENST00000628023 SLFN13Q68D06 897 aa21.24■□□□□ 0.99
CLN3-239ENST00000628023 CYB5R4Q7L1T6 521 aa21.24■□□□□ 0.99
CLN3-239ENST00000628023 GMCL1P1Q8NEA9 526 aa21.24■□□□□ 0.99
CLN3-239ENST00000628023 CHMP4CQ96CF2 233 aa21.24■□□□□ 0.99
CLN3-239ENST00000628023 TTC14Q96N46 770 aa21.24■□□□□ 0.99
CLN3-239ENST00000628023 TMEM47Q9BQJ4 181 aa21.24■□□□□ 0.99
CLN3-239ENST00000628023 MCCP23508 829 aa21.23■□□□□ 0.99
CLN3-239ENST00000628023 GTF3C2Q8WUA4 911 aaPredicted RBP21.23■□□□□ 0.99
CLN3-239ENST00000628023 DPF3Q92784 378 aa21.23■□□□□ 0.99
CLN3-239ENST00000628023 NUP88Q99567 741 aaPredicted RBP21.23■□□□□ 0.99
CLN3-239ENST00000628023 P2RX7Q99572 595 aaKnown RBP21.23■□□□□ 0.99
CLN3-239ENST00000628023 HTATIP2Q9BUP3 242 aa21.23■□□□□ 0.99
CLN3-239ENST00000628023 KAT14Q9H8E8 782 aa21.23■□□□□ 0.99
CLN3-239ENST00000628023 IFIT3O14879 490 aaKnown RBP21.22■□□□□ 0.99
CLN3-239ENST00000628023 EPB41L2O43491 1005 aaKnown RBP21.22■□□□□ 0.99
CLN3-239ENST00000628023 SLC1A4P43007 532 aa21.22■□□□□ 0.99
CLN3-239ENST00000628023 NOVP48745 357 aa21.22■□□□□ 0.99
CLN3-239ENST00000628023 KRT32Q14532 448 aa21.22■□□□□ 0.99
CLN3-239ENST00000628023 CCDC96Q2M329 555 aa21.22■□□□□ 0.99
CLN3-239ENST00000628023 IFIT1BQ5T764 474 aaKnown RBP21.22■□□□□ 0.99
CLN3-239ENST00000628023 DGKHQ86XP1 1220 aa21.22■□□□□ 0.99
CLN3-239ENST00000628023 ENAHQ8N8S7 591 aaPredicted RBP21.22■□□□□ 0.99
CLN3-239ENST00000628023 SHISA4Q96DD7 197 aa21.22■□□□□ 0.99
CLN3-239ENST00000628023 PAGR1Q9BTK6 254 aa21.22■□□□□ 0.99
CLN3-239ENST00000628023 ELNP15502 786 aa21.21■□□□□ 0.99
CLN3-239ENST00000628023 MCM5P33992 734 aa21.21■□□□□ 0.99
CLN3-239ENST00000628023 HSPA4P34932 840 aa21.21■□□□□ 0.99
CLN3-239ENST00000628023 IKQ13123 557 aaPredicted RBP21.21■□□□□ 0.99
CLN3-239ENST00000628023 COG2Q14746 738 aa21.21■□□□□ 0.99
CLN3-239ENST00000628023 RCSD1Q6JBY9 416 aa21.21■□□□□ 0.99
CLN3-239ENST00000628023 CHST3Q7LGC8 479 aa21.21■□□□□ 0.99
CLN3-239ENST00000628023 MB21D2Q8IYB1 491 aaPredicted RBP21.21■□□□□ 0.99
CLN3-239ENST00000628023 U2AF1L4Q8WU68 220 aaKnown RBP21.21■□□□□ 0.99
CLN3-239ENST00000628023 UNC93B1Q9H1C4 597 aa21.21■□□□□ 0.99
CLN3-239ENST00000628023 INHAP05111 366 aa21.2■□□□□ 0.98
CLN3-239ENST00000628023 BMP3P12645 472 aa21.2■□□□□ 0.98
CLN3-239ENST00000628023 RASEFQ8IZ41 740 aa21.2■□□□□ 0.98
CLN3-239ENST00000628023 GMCL1Q96IK5 515 aa21.2■□□□□ 0.98
CLN3-239ENST00000628023 NEK1Q96PY6 1258 aa21.2■□□□□ 0.98
CLN3-239ENST00000628023 HOXC10Q9NYD6 342 aa21.2■□□□□ 0.98
CLN3-239ENST00000628023 SPDYE16A6NNV3 312 aaPredicted RBP21.19■□□□□ 0.98
CLN3-239ENST00000628023 PRC1O43663 620 aa21.19■□□□□ 0.98
CLN3-239ENST00000628023 SGPL1O95470 568 aa21.19■□□□□ 0.98
CLN3-239ENST00000628023 TFRCP02786 760 aaKnown RBP21.19■□□□□ 0.98
CLN3-239ENST00000628023 TMEM67Q5HYA8 995 aa21.19■□□□□ 0.98
CLN3-239ENST00000628023 PNMA1Q8ND90 353 aa21.19■□□□□ 0.98
CLN3-239ENST00000628023 DCAF4Q8WV16 495 aa21.19■□□□□ 0.98
CLN3-239ENST00000628023 SLF1Q9BQI6 1058 aa21.19■□□□□ 0.98
CLN3-239ENST00000628023 USP26Q9BXU7 913 aa21.19■□□□□ 0.98
CLN3-239ENST00000628023 FBXO28Q9NVF7 368 aa21.19■□□□□ 0.98
CLN3-239ENST00000628023 CEP290O15078 2479 aa21.19■□□□□ 0.98
CLN3-239ENST00000628023 H0YGN5 161 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms