RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 ZSWIM5Q9P217 1185 aa17.3■□□□□ 0.36
PNKP-221ENST00000627317 CLIP2Q9UDT6 1046 aa17.3■□□□□ 0.36
PNKP-221ENST00000627317 TMX2Q9Y320 296 aa17.3■□□□□ 0.36
PNKP-221ENST00000627317 SNX14Q9Y5W7 946 aa17.3■□□□□ 0.36
PNKP-221ENST00000627317 USP17L15C9J2P7 530 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 USP17L13C9JLJ4 530 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 USP17L11C9JVI0 530 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 USP17L18D6R9N7 530 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 USP17L22D6RA61 530 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 USP17L17D6RBQ6 530 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 USP17L19D6RCP7 530 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 USP17L20D6RJB6 530 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 FLT3LGP49771 235 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 USP17L24Q0WX57 530 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 SART3Q15020 963 aaKnown RBP17.29■□□□□ 0.36
PNKP-221ENST00000627317 TSGA10IPQ3SY00 556 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 CYB5R4Q7L1T6 521 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 MB21D2Q8IYB1 491 aaPredicted RBP17.29■□□□□ 0.36
PNKP-221ENST00000627317 NKX2-3Q8TAU0 364 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 KCNB2Q92953 911 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 NEK1Q96PY6 1258 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 ZSCAN10Q96SZ4 725 aaPredicted RBP17.29■□□□□ 0.36
PNKP-221ENST00000627317 RPAP3Q9H6T3 665 aaPredicted RBP17.29■□□□□ 0.36
PNKP-221ENST00000627317 UPF2Q9HAU5 1272 aaKnown RBP17.29■□□□□ 0.36
PNKP-221ENST00000627317 GOPCQ9HD26 462 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 IL17RBQ9NRM6 502 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 GJD2Q9UKL4 321 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 A0A0G2JMZ2 1700 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 MYH4Q9Y623 1939 aa17.29■□□□□ 0.36
PNKP-221ENST00000627317 TNKSO95271 1327 aa17.28■□□□□ 0.36
PNKP-221ENST00000627317 RAD21O60216 631 aa17.28■□□□□ 0.36
PNKP-221ENST00000627317 GRK4P32298 578 aa17.28■□□□□ 0.36
PNKP-221ENST00000627317 MCM5P33992 734 aa17.28■□□□□ 0.36
PNKP-221ENST00000627317 NBPF11Q86T75 865 aa17.28■□□□□ 0.36
PNKP-221ENST00000627317 LRRC47Q8N1G4 583 aaKnown RBP17.28■□□□□ 0.36
PNKP-221ENST00000627317 GPRC5AQ8NFJ5 357 aa17.28■□□□□ 0.36
PNKP-221ENST00000627317 RAET1EQ8TD07 263 aa17.28■□□□□ 0.36
PNKP-221ENST00000627317 GTF3C2Q8WUA4 911 aaPredicted RBP17.28■□□□□ 0.36
PNKP-221ENST00000627317 JAKMIP1Q96N16 626 aaKnown RBP17.28■□□□□ 0.36
PNKP-221ENST00000627317 VCPKMTQ9H867 229 aa17.28■□□□□ 0.36
PNKP-221ENST00000627317 ERICH2A1L162 156 aa17.27■□□□□ 0.36
PNKP-221ENST00000627317 SPDYE16A6NNV3 312 aaPredicted RBP17.27■□□□□ 0.36
PNKP-221ENST00000627317 IFIT3O14879 490 aaKnown RBP17.27■□□□□ 0.36
PNKP-221ENST00000627317 PRC1O43663 620 aa17.27■□□□□ 0.36
PNKP-221ENST00000627317 TOP1P11387 765 aaKnown RBP17.27■□□□□ 0.36
PNKP-221ENST00000627317 ERVK-9P63128 1117 aa17.27■□□□□ 0.36
PNKP-221ENST00000627317 ERVK-24P63145 666 aa17.27■□□□□ 0.36
PNKP-221ENST00000627317 Q3C1V9 767 aa17.27■□□□□ 0.36
PNKP-221ENST00000627317 ADCK5Q3MIX3 580 aa17.27■□□□□ 0.36
PNKP-221ENST00000627317 SLAIN1Q8ND83 568 aa17.27■□□□□ 0.36
PNKP-221ENST00000627317 LPAR1Q92633 364 aa17.27■□□□□ 0.36
PNKP-221ENST00000627317 PORCNQ9H237 461 aa17.27■□□□□ 0.36
PNKP-221ENST00000627317 SYNPO2Q9UMS6 1093 aa17.27■□□□□ 0.36
PNKP-221ENST00000627317 RLFQ13129 1914 aa17.27■□□□□ 0.35
PNKP-221ENST00000627317 PLXNB2O15031 1838 aa17.26■□□□□ 0.35
PNKP-221ENST00000627317 HMGB1P09429 215 aaKnown RBP17.26■□□□□ 0.35
PNKP-221ENST00000627317 PSMA5P28066 241 aa17.26■□□□□ 0.35
PNKP-221ENST00000627317 CHST3Q7LGC8 479 aa17.26■□□□□ 0.35
PNKP-221ENST00000627317 DGKHQ86XP1 1220 aa17.26■□□□□ 0.35
PNKP-221ENST00000627317 ENAHQ8N8S7 591 aaPredicted RBP17.26■□□□□ 0.35
PNKP-221ENST00000627317 PXYLP1Q8TE99 480 aa17.26■□□□□ 0.35
PNKP-221ENST00000627317 MKL1Q969V6 931 aa17.26■□□□□ 0.35
PNKP-221ENST00000627317 TTC14Q96N46 770 aa17.26■□□□□ 0.35
PNKP-221ENST00000627317 RABGAP1Q9Y3P9 1069 aa17.26■□□□□ 0.35
PNKP-221ENST00000627317 ADCY3O60266 1144 aa17.25■□□□□ 0.35
PNKP-221ENST00000627317 ELNP15502 786 aa17.25■□□□□ 0.35
PNKP-221ENST00000627317 NOVP48745 357 aa17.25■□□□□ 0.35
PNKP-221ENST00000627317 ANTXR2P58335 489 aa17.25■□□□□ 0.35
PNKP-221ENST00000627317 ANAPC15P60006 121 aa17.25■□□□□ 0.35
PNKP-221ENST00000627317 MTFR1Q15390 333 aa17.25■□□□□ 0.35
PNKP-221ENST00000627317 TMEM67Q5HYA8 995 aa17.25■□□□□ 0.35
PNKP-221ENST00000627317 IFIT1BQ5T764 474 aaKnown RBP17.25■□□□□ 0.35
PNKP-221ENST00000627317 RCSD1Q6JBY9 416 aa17.25■□□□□ 0.35
PNKP-221ENST00000627317 BLOC1S2Q6QNY1 142 aa17.25■□□□□ 0.35
PNKP-221ENST00000627317 SPICE1Q8N0Z3 855 aa17.25■□□□□ 0.35
PNKP-221ENST00000627317 USP6NLQ92738 828 aa17.25■□□□□ 0.35
PNKP-221ENST00000627317 COA7Q96BR5 231 aa17.25■□□□□ 0.35
PNKP-221ENST00000627317 TMEM47Q9BQJ4 181 aa17.25■□□□□ 0.35
PNKP-221ENST00000627317 KAT14Q9H8E8 782 aa17.25■□□□□ 0.35
PNKP-221ENST00000627317 BTBD7Q9P203 1132 aa17.25■□□□□ 0.35
PNKP-221ENST00000627317 ISY1Q9ULR0 285 aaKnown RBP17.25■□□□□ 0.35
PNKP-221ENST00000627317 F5H6K3 240 aa17.24■□□□□ 0.35
PNKP-221ENST00000627317 NDUFB10O96000 172 aa17.24■□□□□ 0.35
PNKP-221ENST00000627317 EN2P19622 333 aaPredicted RBP17.24■□□□□ 0.35
PNKP-221ENST00000627317 CASTP20810 708 aaKnown RBP17.24■□□□□ 0.35
PNKP-221ENST00000627317 KLRC3Q07444 240 aa17.24■□□□□ 0.35
PNKP-221ENST00000627317 WTAPQ15007 396 aa17.24■□□□□ 0.35
PNKP-221ENST00000627317 DHX32Q7L7V1 743 aaKnown RBP17.24■□□□□ 0.35
PNKP-221ENST00000627317 GMCL1P1Q8NEA9 526 aa17.24■□□□□ 0.35
PNKP-221ENST00000627317 SHISA4Q96DD7 197 aa17.24■□□□□ 0.35
PNKP-221ENST00000627317 TMEM87BQ96K49 555 aa17.24■□□□□ 0.35
PNKP-221ENST00000627317 MTA3Q9BTC8 594 aa17.24■□□□□ 0.35
PNKP-221ENST00000627317 PAGR1Q9BTK6 254 aa17.24■□□□□ 0.35
PNKP-221ENST00000627317 TANGO6Q9C0B7 1094 aa17.24■□□□□ 0.35
PNKP-221ENST00000627317 MTMR7Q9Y216 660 aa17.24■□□□□ 0.35
PNKP-221ENST00000627317 KIAA0100Q14667 2235 aaKnown RBP17.24■□□□□ 0.35
PNKP-221ENST00000627317 WDR19Q8NEZ3 1342 aa17.23■□□□□ 0.35
PNKP-221ENST00000627317 WDR46O15213 610 aaKnown RBP17.23■□□□□ 0.35
PNKP-221ENST00000627317 MAPK4P31152 587 aa17.23■□□□□ 0.35
PNKP-221ENST00000627317 FGD1P98174 961 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms