RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 SH3RF3Q8TEJ3 882 aaPredicted RBP14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 ADD3Q9UEY8 706 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 CHD4Q14839 1912 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 TRIM49BA6NDI0 452 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 ERICH4A6NGS2 130 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 POLR3GO15318 223 aaPredicted RBP14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 TFRCP02786 760 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 TUBB4AP04350 444 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 H2AFXP16104 143 aaPredicted RBP14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 GRIK5Q16478 980 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 INF2Q27J81 1249 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 SH3RF1Q7Z6J0 888 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 MAPKAPK5Q8IW41 473 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 BLIDQ8IZY5 108 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 ACRBPQ8NEB7 543 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 NELFBQ8WX92 580 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 IL17RBQ9NRM6 502 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 ATP8A2Q9NTI2 1148 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 ARGLU1Q9NWB6 273 aaPredicted RBP14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 BCL9LQ86UU0 1499 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 BMP15O95972 392 aa14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 ABL1P00519 1130 aa14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 KIF5BP33176 963 aa14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 BMS1Q14692 1282 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 KRT31Q15323 416 aa14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 ZNF569Q5MCW4 686 aa14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 RCSD1Q6JBY9 416 aa14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 TPTE2Q6XPS3 522 aa14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 APTXQ7Z2E3 356 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 AMIGO3Q86WK7 504 aa14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 FCHSD1Q86WN1 690 aa14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 C8orf37Q96NL8 207 aa14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 THRAP3Q9Y2W1 955 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 TADA3O75528 432 aa14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 TYW1BQ6NUM6 668 aa14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 ARPP21Q9UBL0 812 aaPredicted RBP14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 LDHBP07195 334 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 TPM1P09493 284 aa14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 UTP14CQ5TAP6 766 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 ZNF444Q8N0Y2 327 aaPredicted RBP14.62□□□□□ -0.07
CCDC88A-214ENST00000621814 SPATA31A5Q5VU36 1347 aa14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 SPATA31A7Q8IWB4 1347 aa14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 RNF225M0QZC1 329 aaPredicted RBP14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 GYPCP04921 128 aa14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 TXLNAP40222 546 aa14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 UBXN1Q04323 297 aa14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 PAK1Q13153 545 aa14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 CTAGE1Q96RT6 745 aa14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 GOLGA6L9A6NEM1 432 aa14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 EFCAB8A8MWE9 144 aa14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 ORC4O43929 436 aa14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 RPN1P04843 607 aaKnown RBP14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 PRCPP42785 496 aa14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 NFIXQ14938 502 aa14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 FHOD1Q9Y613 1164 aa14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 ADGRG1Q9Y653 693 aa14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 TIAM2Q8IVF5 1701 aa14.61□□□□□ -0.07
CCDC88A-214ENST00000621814 FGRP09769 529 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 PNMA6AP0CW24 399 aaPredicted RBP14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 E2F4Q16254 413 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 KIF4BQ2VIQ3 1234 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 PDXDC2PQ6P474 469 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 DTHD1Q6ZMT9 781 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 SRRTQ9BXP5 876 aaKnown RBP14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 ANKRD2Q9GZV1 360 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 TMEM60Q9H2L4 133 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 COL14A1Q05707 1796 aaKnown RBP14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 DOCK2Q92608 1830 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 KCNJ18B7U540 433 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 KIF5CO60282 957 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 UBA7P41226 1012 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 MAP3K9P80192 1104 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 KCNJ12Q14500 433 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 CDKAL1Q5VV42 579 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 NGLY1Q96IV0 654 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 NOL10Q9BSC4 688 aaKnown RBP14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 NYXQ9GZU5 481 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 MRFAP1Q9Y605 127 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 MFAP3LO75121 409 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 ANKRD20A12PQ8NF67 263 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 KIFC2Q96AC6 838 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 SLF1Q9BQI6 1058 aa14.6□□□□□ -0.07
CCDC88A-214ENST00000621814 NHSL1Q5SYE7 1610 aa14.59□□□□□ -0.07
CCDC88A-214ENST00000621814 PCP11498 1178 aaKnown RBP14.59□□□□□ -0.07
CCDC88A-214ENST00000621814 PANX2Q96RD6 677 aa14.59□□□□□ -0.07
CCDC88A-214ENST00000621814 DUOX1Q9NRD9 1551 aa14.59□□□□□ -0.07
CCDC88A-214ENST00000621814 PCDHA4Q9UN74 947 aa14.59□□□□□ -0.07
CCDC88A-214ENST00000621814 GTPBP6O43824 516 aaPredicted RBP14.59□□□□□ -0.07
CCDC88A-214ENST00000621814 TERF2Q15554 542 aa14.59□□□□□ -0.07
CCDC88A-214ENST00000621814 LETM2Q2VYF4 491 aa14.59□□□□□ -0.07
CCDC88A-214ENST00000621814 WWC2Q6AWC2 1192 aa14.59□□□□□ -0.07
CCDC88A-214ENST00000621814 GPIHBP1Q8IV16 184 aa14.59□□□□□ -0.07
CCDC88A-214ENST00000621814 AMOTL1Q8IY63 956 aa14.59□□□□□ -0.07
CCDC88A-214ENST00000621814 SEMA3EO15041 775 aa14.58□□□□□ -0.07
CCDC88A-214ENST00000621814 CALML3P27482 149 aa14.58□□□□□ -0.07
CCDC88A-214ENST00000621814 KRT9P35527 623 aa14.58□□□□□ -0.07
CCDC88A-214ENST00000621814 COPB1P53618 953 aaKnown RBP14.58□□□□□ -0.07
CCDC88A-214ENST00000621814 PMS1P54277 932 aaKnown RBP14.58□□□□□ -0.07
CCDC88A-214ENST00000621814 C12orf60Q5U649 245 aa14.58□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms