RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 HSCBQ8IWL3 235 aa17.14■□□□□ 0.33
CD48-203ENST00000613788 RBM28Q9NW13 759 aaKnown RBP17.14■□□□□ 0.33
CD48-203ENST00000613788 ISY1Q9ULR0 285 aaKnown RBP17.14■□□□□ 0.33
CD48-203ENST00000613788 MYH4Q9Y623 1939 aa17.13■□□□□ 0.33
CD48-203ENST00000613788 DHX16O60231 1041 aaKnown RBP17.13■□□□□ 0.33
CD48-203ENST00000613788 PFKFB2O60825 505 aa17.13■□□□□ 0.33
CD48-203ENST00000613788 VCAM1P19320 739 aa17.13■□□□□ 0.33
CD48-203ENST00000613788 RXRAP19793 462 aa17.13■□□□□ 0.33
CD48-203ENST00000613788 RTN1Q16799 776 aa17.13■□□□□ 0.33
CD48-203ENST00000613788 KIAA1755Q5JYT7 1200 aa17.13■□□□□ 0.33
CD48-203ENST00000613788 GADL1Q6ZQY3 521 aa17.13■□□□□ 0.33
CD48-203ENST00000613788 RAB11FIP4Q86YS3 637 aa17.13■□□□□ 0.33
CD48-203ENST00000613788 CCDC144CPQ8IYA2 1237 aa17.13■□□□□ 0.33
CD48-203ENST00000613788 MS4A4AQ96JQ5 239 aa17.13■□□□□ 0.33
CD48-203ENST00000613788 HPS5Q9UPZ3 1129 aa17.13■□□□□ 0.33
CD48-203ENST00000613788 PHIPQ8WWQ0 1821 aa17.13■□□□□ 0.33
CD48-203ENST00000613788 PALM3A6NDB9 673 aaPredicted RBP17.12■□□□□ 0.33
CD48-203ENST00000613788 MANSC4A6NHS7 340 aaPredicted RBP17.12■□□□□ 0.33
CD48-203ENST00000613788 FAM155AB1AL88 458 aaPredicted RBP17.12■□□□□ 0.33
CD48-203ENST00000613788 INHBEP58166 350 aa17.12■□□□□ 0.33
CD48-203ENST00000613788 C1QTNF8P60827 252 aa17.12■□□□□ 0.33
CD48-203ENST00000613788 CCT2P78371 535 aaKnown RBP17.12■□□□□ 0.33
CD48-203ENST00000613788 ZNF543Q08ER8 600 aa17.12■□□□□ 0.33
CD48-203ENST00000613788 FAM83BQ5T0W9 1011 aa17.12■□□□□ 0.33
CD48-203ENST00000613788 TMX3Q96JJ7 454 aa17.12■□□□□ 0.33
CD48-203ENST00000613788 LZTS2Q9BRK4 669 aa17.12■□□□□ 0.33
CD48-203ENST00000613788 MAD2L2Q9UI95 211 aa17.12■□□□□ 0.33
CD48-203ENST00000613788 NID2Q14112 1375 aa17.12■□□□□ 0.33
CD48-203ENST00000613788 CCL15-CCL14A0A0B4J2E2 113 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 KLRF2D3W0D1 207 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 K7ELQ4 463 aaPredicted RBP17.11■□□□□ 0.33
CD48-203ENST00000613788 ANP32AP39687 249 aaKnown RBP17.11■□□□□ 0.33
CD48-203ENST00000613788 PABPC4Q13310 644 aaKnown RBP eCLIP17.11■□□□□ 0.33
CD48-203ENST00000613788 DGKZQ13574 1117 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 BECN1Q14457 450 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 CCL15Q16663 113 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 CYP4F22Q6NT55 531 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 CPLX2Q6PUV4 134 aaKnown RBP17.11■□□□□ 0.33
CD48-203ENST00000613788 KCTD1Q719H9 257 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 CHURC1Q8WUH1 139 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 NUP88Q99567 741 aaPredicted RBP17.11■□□□□ 0.33
CD48-203ENST00000613788 RPAP3Q9H6T3 665 aaPredicted RBP17.11■□□□□ 0.33
CD48-203ENST00000613788 GPCPD1Q9NPB8 672 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 RBM19Q9Y4C8 960 aaKnown RBP17.11■□□□□ 0.33
CD48-203ENST00000613788 FRMPD2Q68DX3 1309 aaPredicted RBP17.11■□□□□ 0.33
CD48-203ENST00000613788 USP17L15C9J2P7 530 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 USP17L13C9JLJ4 530 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 TMEM232C9JQI7 657 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 USP17L11C9JVI0 530 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 USP17L18D6R9N7 530 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 USP17L22D6RA61 530 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 USP17L17D6RBQ6 530 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 USP17L19D6RCP7 530 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 USP17L20D6RJB6 530 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 CPLX1O14810 134 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 PLA2G6O60733 806 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 LARGE1O95461 756 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 GOLGA8HP0CJ92 632 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 SMARCA1P28370 1054 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 USP17L24Q0WX57 530 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 SCRN1Q12765 414 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 IKQ13123 557 aaPredicted RBP17.11■□□□□ 0.33
CD48-203ENST00000613788 NOGQ13253 232 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 STAG2Q8N3U4 1231 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 GTF3C6Q969F1 213 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 TANGO6Q9C0B7 1094 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 FEM1BQ9UK73 627 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 AGTPBP1Q9UPW5 1226 aa17.11■□□□□ 0.33
CD48-203ENST00000613788 TESPA1A2RU30 521 aaPredicted RBP17.1■□□□□ 0.33
CD48-203ENST00000613788 CDC27P30260 824 aa17.1■□□□□ 0.33
CD48-203ENST00000613788 HOXA7P31268 230 aaPredicted RBP17.1■□□□□ 0.33
CD48-203ENST00000613788 ADD1P35611 737 aaKnown RBP17.1■□□□□ 0.33
CD48-203ENST00000613788 STAT2P52630 851 aa17.1■□□□□ 0.33
CD48-203ENST00000613788 SREBF2Q12772 1141 aa17.1■□□□□ 0.33
CD48-203ENST00000613788 GRM1Q13255 1194 aa17.1■□□□□ 0.33
CD48-203ENST00000613788 MOGSQ13724 837 aa17.1■□□□□ 0.33
CD48-203ENST00000613788 RASGRP2Q7LDG7 609 aa17.1■□□□□ 0.33
CD48-203ENST00000613788 FAM160B2Q86V87 743 aa17.1■□□□□ 0.33
CD48-203ENST00000613788 NECAB1Q8N987 351 aa17.1■□□□□ 0.33
CD48-203ENST00000613788 CAPNS2Q96L46 248 aa17.1■□□□□ 0.33
CD48-203ENST00000613788 NCOA5Q9HCD5 579 aaKnown RBP17.1■□□□□ 0.33
CD48-203ENST00000613788 FAM217BQ9NTX9 383 aaPredicted RBP17.1■□□□□ 0.33
CD48-203ENST00000613788 CDKL5O76039 1030 aa17.09■□□□□ 0.33
CD48-203ENST00000613788 HSPA6P17066 643 aa17.09■□□□□ 0.33
CD48-203ENST00000613788 TREML2Q5T2D2 321 aa17.09■□□□□ 0.33
CD48-203ENST00000613788 BTNL9Q6UXG8 535 aa17.09■□□□□ 0.33
CD48-203ENST00000613788 CATSPERGQ6ZRH7 1159 aa17.09■□□□□ 0.33
CD48-203ENST00000613788 TMTC3Q6ZXV5 915 aa17.09■□□□□ 0.33
CD48-203ENST00000613788 REM2Q8IYK8 340 aaPredicted RBP17.09■□□□□ 0.33
CD48-203ENST00000613788 BRI3BPQ8WY22 251 aa17.09■□□□□ 0.33
CD48-203ENST00000613788 SLC45A1Q9Y2W3 748 aa17.09■□□□□ 0.33
CD48-203ENST00000613788 FLOT1O75955 427 aa17.08■□□□□ 0.32
CD48-203ENST00000613788 OSBPP22059 807 aa17.08■□□□□ 0.32
CD48-203ENST00000613788 COG2Q14746 738 aa17.08■□□□□ 0.32
CD48-203ENST00000613788 OTUD7BQ6GQQ9 843 aa17.08■□□□□ 0.32
CD48-203ENST00000613788 TTBK2Q6IQ55 1244 aa17.08■□□□□ 0.32
CD48-203ENST00000613788 GPAT2Q6NUI2 795 aa17.08■□□□□ 0.32
CD48-203ENST00000613788 ANKRD23Q86SG2 305 aa17.08■□□□□ 0.32
CD48-203ENST00000613788 CCDC83Q8IWF9 413 aa17.08■□□□□ 0.32
CD48-203ENST00000613788 PRPF38AQ8NAV1 312 aaKnown RBP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms