RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 CALCOCO2Q13137 446 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 PPP1R7Q15435 360 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 UBLCP1Q8WVY7 318 aaPredicted RBP15.31■□□□□ 0.04
GGA3-220ENST00000613421 FAM212AQ96EL1 285 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 FRMPD2Q68DX3 1309 aaPredicted RBP15.31■□□□□ 0.04
GGA3-220ENST00000613421 TLDC2A0PJX2 215 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 H0YIN7 160 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 MMP1P03956 469 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 TRAPPC10P48553 1259 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 RNASE9P60153 205 aaKnown RBP15.31■□□□□ 0.04
GGA3-220ENST00000613421 ERCC6LQ2NKX8 1250 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 GSDMAQ96QA5 445 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 PIH1D3Q9NQM4 214 aaKnown RBP15.31■□□□□ 0.04
GGA3-220ENST00000613421 CALRP27797 417 aaKnown RBP15.31■□□□□ 0.04
GGA3-220ENST00000613421 ALDH1B1P30837 517 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 C2CD5Q86YS7 1000 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 MYCT1Q8N699 235 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 TTLL11Q8NHH1 800 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 TTC14Q96N46 770 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 HOMER2Q9NSB8 354 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 A0A087WWV3 80 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 CCDC169A6NNP5 214 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 GCNT3O95395 438 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 DYNLL1P63167 89 aaKnown RBP15.31■□□□□ 0.04
GGA3-220ENST00000613421 PLCB3Q01970 1234 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 IFT20Q8IY31 132 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 MRPL44Q9H9J2 332 aaKnown RBP15.31■□□□□ 0.04
GGA3-220ENST00000613421 TSKSQ9UJT2 592 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 IQSEC2Q5JU85 1478 aa15.31■□□□□ 0.04
GGA3-220ENST00000613421 SMIM23A6NLE4 172 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 GNA14O95837 355 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 ERCC5P28715 1186 aaPredicted RBP15.3■□□□□ 0.04
GGA3-220ENST00000613421 KIFAP3Q92845 792 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 CRB1P82279 1406 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 STX10O60499 249 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 CFBP00751 764 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 CCDC25Q86WR0 208 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 MYOCDQ8IZQ8 938 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 KIF2CQ99661 725 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 PAIP2Q9BPZ3 127 aaKnown RBP15.3■□□□□ 0.04
GGA3-220ENST00000613421 NLRC4Q9NPP4 1024 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 ZSWIM5Q9P217 1185 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 SPOPO43791 374 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 WHAMMP3Q1A5X7 153 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 KIAA1524Q8TCG1 905 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 CACTINQ8WUQ7 758 aaKnown RBP15.3■□□□□ 0.04
GGA3-220ENST00000613421 FNBP1Q96RU3 617 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 PSMB7Q99436 277 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 CEP83Q9Y592 693 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 SAR1BQ9Y6B6 198 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 MYO3AQ8NEV4 1616 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 FLOT1O75955 427 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 KRT5P13647 590 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 LIFRP42702 1097 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 LRRC47Q8N1G4 583 aaKnown RBP15.3■□□□□ 0.04
GGA3-220ENST00000613421 NEXMIFQ5QGS0 1516 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 BIRC3Q13489 604 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 ANKS4BQ8N8V4 417 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 PSTPIP2Q9H939 334 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 EXOC7Q9UPT5 735 aa15.3■□□□□ 0.04
GGA3-220ENST00000613421 RFX7Q2KHR2 1363 aa15.29■□□□□ 0.04
GGA3-220ENST00000613421 WDR44Q5JSH3 913 aa15.29■□□□□ 0.04
GGA3-220ENST00000613421 CLEC17AQ6ZS10 378 aa15.29■□□□□ 0.04
GGA3-220ENST00000613421 KIAA1210Q9ULL0 1709 aa15.29■□□□□ 0.04
GGA3-220ENST00000613421 DLC1Q96QB1 1528 aa15.29■□□□□ 0.04
GGA3-220ENST00000613421 IQGAP1P46940 1657 aa15.29■□□□□ 0.04
GGA3-220ENST00000613421 GPBP1Q86WP2 473 aa15.29■□□□□ 0.04
GGA3-220ENST00000613421 RPGRIP1Q96KN7 1286 aa15.29■□□□□ 0.04
GGA3-220ENST00000613421 PPP1R13BQ96KQ4 1090 aa15.29■□□□□ 0.04
GGA3-220ENST00000613421 MCAMP43121 646 aa15.29■□□□□ 0.04
GGA3-220ENST00000613421 MNAT1P51948 309 aa15.29■□□□□ 0.04
GGA3-220ENST00000613421 RASGRF1Q13972 1273 aa15.29■□□□□ 0.04
GGA3-220ENST00000613421 CCDC121Q6ZUS5 278 aa15.29■□□□□ 0.04
GGA3-220ENST00000613421 EFCAB8A8MWE9 144 aa15.29■□□□□ 0.04
GGA3-220ENST00000613421 DDX39AO00148 427 aaKnown RBP15.29■□□□□ 0.04
GGA3-220ENST00000613421 ERFEQ4G0M1 354 aa15.29■□□□□ 0.04
GGA3-220ENST00000613421 CFAP221Q4G0U5 840 aa15.29■□□□□ 0.04
GGA3-220ENST00000613421 EXOC3O60645 756 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 NR5A1Q13285 461 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 CPLX4Q7Z7G2 160 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 OTUD6BQ8N6M0 293 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 SUPT20HQ8NEM7 779 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 IQCGQ9H095 443 aaKnown RBP15.28■□□□□ 0.04
GGA3-220ENST00000613421 GPHNQ9NQX3 736 aaPredicted RBP15.28■□□□□ 0.04
GGA3-220ENST00000613421 PCDHA12Q9UN75 941 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 XDHP47989 1333 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 SPATA31A3Q5VYP0 1347 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 OAS2P29728 719 aaKnown RBP15.28■□□□□ 0.04
GGA3-220ENST00000613421 COPB1P53618 953 aaKnown RBP15.28■□□□□ 0.04
GGA3-220ENST00000613421 BRD3Q15059 726 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 LEMD3Q9Y2U8 911 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 CEP104O60308 925 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 MAEAQ7L5Y9 396 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 MICALL1Q8N3F8 863 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 MSANTD4Q8NCY6 345 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 CCDC114Q96M63 670 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 AIFM3Q96NN9 605 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 LSM14BQ9BX40 385 aaKnown RBP15.28■□□□□ 0.04
GGA3-220ENST00000613421 MAGEF1Q9HAY2 307 aa15.28■□□□□ 0.04
GGA3-220ENST00000613421 PCDHA4Q9UN74 947 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms