RNA–Protein interactions for RNA: ENST00000612672.1

MMP28-203, Transcript of matrix metallopeptidase 28, humanhuman

TSL 1 (best) BASIC

Gene MMP28, Length 1,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-203ENST00000612672 ICA1Q05084 483 aa28.37■■■□□ 2.13
MMP28-203ENST00000612672 ABRAQ8N0Z2 381 aa28.37■■■□□ 2.13
MMP28-203ENST00000612672 MB21D1Q8N884 522 aa28.37■■■□□ 2.13
MMP28-203ENST00000612672 LENG1Q96BZ8 264 aaPredicted RBP28.37■■■□□ 2.13
MMP28-203ENST00000612672 DNAJC2Q99543 621 aaKnown RBP28.37■■■□□ 2.13
MMP28-203ENST00000612672 VCPKMTQ9H867 229 aa28.37■■■□□ 2.13
MMP28-203ENST00000612672 FBXO28Q9NVF7 368 aa28.37■■■□□ 2.13
MMP28-203ENST00000612672 PGK2P07205 417 aa28.36■■■□□ 2.13
MMP28-203ENST00000612672 ERC1Q8IUD2 1116 aa28.36■■■□□ 2.13
MMP28-203ENST00000612672 MAFAQ8NHW3 353 aaPredicted RBP28.36■■■□□ 2.13
MMP28-203ENST00000612672 PHF24Q9UPV7 400 aa28.36■■■□□ 2.13
MMP28-203ENST00000612672 CHD9Q3L8U1 2897 aa28.36■■■□□ 2.13
MMP28-203ENST00000612672 TTF1Q15361 905 aaPredicted RBP28.35■■■□□ 2.13
MMP28-203ENST00000612672 C1orf53Q5VUE5 145 aa28.35■■■□□ 2.13
MMP28-203ENST00000612672 PANK1Q8TE04 598 aa28.35■■■□□ 2.13
MMP28-203ENST00000612672 PGK1P00558 417 aa28.34■■■□□ 2.13
MMP28-203ENST00000612672 SWAP70Q9UH65 585 aa28.34■■■□□ 2.13
MMP28-203ENST00000612672 ADAMTS5Q9UNA0 930 aa28.34■■■□□ 2.13
MMP28-203ENST00000612672 APBB1O00213 710 aa28.33■■■□□ 2.13
MMP28-203ENST00000612672 MBD4O95243 580 aa28.33■■■□□ 2.13
MMP28-203ENST00000612672 SMAD3P84022 425 aaKnown RBP28.33■■■□□ 2.13
MMP28-203ENST00000612672 PPIL4Q8WUA2 492 aaKnown RBP eCLIP28.33■■■□□ 2.13
MMP28-203ENST00000612672 XPNPEP3Q9NQH7 507 aa28.33■■■□□ 2.13
MMP28-203ENST00000612672 WDR46O15213 610 aaKnown RBP28.32■■■□□ 2.12
MMP28-203ENST00000612672 FCER1AP12319 257 aa28.32■■■□□ 2.12
MMP28-203ENST00000612672 REPS2Q8NFH8 660 aa28.32■■■□□ 2.12
MMP28-203ENST00000612672 ARHGEF10LQ9HCE6 1279 aa28.32■■■□□ 2.12
MMP28-203ENST00000612672 ROBO3Q96MS0 1386 aa28.32■■■□□ 2.12
MMP28-203ENST00000612672 CDK8P49336 464 aa28.31■■■□□ 2.12
MMP28-203ENST00000612672 ZNF792Q3KQV3 632 aa28.31■■■□□ 2.12
MMP28-203ENST00000612672 MMP19Q99542 508 aa28.31■■■□□ 2.12
MMP28-203ENST00000612672 SLC5A4Q9NY91 659 aa28.31■■■□□ 2.12
MMP28-203ENST00000612672 MCM3APO60318 1980 aa28.3■■■□□ 2.12
MMP28-203ENST00000612672 ZNF865P0CJ78 1059 aaPredicted RBP28.3■■■□□ 2.12
MMP28-203ENST00000612672 EEF2P13639 858 aaKnown RBP28.3■■■□□ 2.12
MMP28-203ENST00000612672 ADD2P35612 726 aa28.3■■■□□ 2.12
MMP28-203ENST00000612672 C12orf60Q5U649 245 aa28.3■■■□□ 2.12
MMP28-203ENST00000612672 RIOX2Q8IUF8 465 aa28.3■■■□□ 2.12
MMP28-203ENST00000612672 SIRT2Q8IXJ6 389 aa28.3■■■□□ 2.12
MMP28-203ENST00000612672 TINF2Q9BSI4 451 aa28.3■■■□□ 2.12
MMP28-203ENST00000612672 ZNF214Q9UL59 606 aaPredicted RBP28.3■■■□□ 2.12
MMP28-203ENST00000612672 A0A1W2PQ45 241 aaPredicted RBP28.29■■■□□ 2.12
MMP28-203ENST00000612672 A0A1W2PQY0 241 aa28.29■■■□□ 2.12
MMP28-203ENST00000612672 CLTBP09497 229 aa28.29■■■□□ 2.12
MMP28-203ENST00000612672 BCL11AQ9H165 835 aa28.29■■■□□ 2.12
MMP28-203ENST00000612672 ADAMTS4O75173 837 aa28.28■■■□□ 2.12
MMP28-203ENST00000612672 SLC25A27O95847 323 aa28.28■■■□□ 2.12
MMP28-203ENST00000612672 RARBP10826 455 aa28.28■■■□□ 2.12
MMP28-203ENST00000612672 C16orf86Q6ZW13 317 aa28.28■■■□□ 2.12
MMP28-203ENST00000612672 GNL3Q9BVP2 549 aaKnown RBP eCLIP28.28■■■□□ 2.12
MMP28-203ENST00000612672 USP17L12C9JPN9 530 aa28.27■■■□□ 2.12
MMP28-203ENST00000612672 USP17L21D6R901 530 aa28.27■■■□□ 2.12
MMP28-203ENST00000612672 VWA5AO00534 786 aa28.27■■■□□ 2.12
MMP28-203ENST00000612672 KIAA0355O15063 1070 aa28.27■■■□□ 2.12
MMP28-203ENST00000612672 PQBP1O60828 265 aaKnown RBP28.27■■■□□ 2.12
MMP28-203ENST00000612672 RNPC3Q96LT9 517 aaKnown RBP28.27■■■□□ 2.12
MMP28-203ENST00000612672 SH2D4AQ9H788 454 aa28.27■■■□□ 2.12
MMP28-203ENST00000612672 ATP8A2Q9NTI2 1148 aa28.27■■■□□ 2.12
MMP28-203ENST00000612672 PAG1Q9NWQ8 432 aa28.27■■■□□ 2.12
MMP28-203ENST00000612672 NRBP1Q9UHY1 535 aa28.27■■■□□ 2.12
MMP28-203ENST00000612672 PPP1R9AQ9ULJ8 1098 aa28.27■■■□□ 2.12
MMP28-203ENST00000612672 ZBED9Q6R2W3 1325 aa28.26■■■□□ 2.11
MMP28-203ENST00000612672 FOSL2P15408 326 aa28.26■■■□□ 2.11
MMP28-203ENST00000612672 IRX5P78411 483 aaPredicted RBP28.26■■■□□ 2.11
MMP28-203ENST00000612672 FAM83BQ5T0W9 1011 aa28.26■■■□□ 2.11
MMP28-203ENST00000612672 CLASRPQ8N2M8 674 aaKnown RBP28.26■■■□□ 2.11
MMP28-203ENST00000612672 KIF1BPQ96EK5 621 aa28.26■■■□□ 2.11
MMP28-203ENST00000612672 BOLA2Q9H3K6 86 aa28.26■■■□□ 2.11
MMP28-203ENST00000612672 TACC3Q9Y6A5 838 aa28.26■■■□□ 2.11
MMP28-203ENST00000612672 REV3LO60673 3130 aa28.26■■■□□ 2.11
MMP28-203ENST00000612672 CHD7Q9P2D1 2997 aa28.26■■■□□ 2.11
MMP28-203ENST00000612672 USP38Q8NB14 1042 aa28.25■■■□□ 2.11
MMP28-203ENST00000612672 NUP88Q99567 741 aaPredicted RBP28.25■■■□□ 2.11
MMP28-203ENST00000612672 SYNRGQ9UMZ2 1314 aa28.24■■■□□ 2.11
MMP28-203ENST00000612672 MYH4Q9Y623 1939 aa28.24■■■□□ 2.11
MMP28-203ENST00000612672 MYADML2A6NDP7 307 aa28.24■■■□□ 2.11
MMP28-203ENST00000612672 STAT3P40763 770 aa28.24■■■□□ 2.11
MMP28-203ENST00000612672 FAAP100Q0VG06 881 aa28.24■■■□□ 2.11
MMP28-203ENST00000612672 HSP90AB4PQ58FF6 505 aa28.24■■■□□ 2.11
MMP28-203ENST00000612672 RNF180Q86T96 592 aa28.24■■■□□ 2.11
MMP28-203ENST00000612672 CCDC17Q96LX7 622 aa28.24■■■□□ 2.11
MMP28-203ENST00000612672 IFIT2P09913 472 aaKnown RBP28.23■■■□□ 2.11
MMP28-203ENST00000612672 KCTD2Q14681 263 aa28.23■■■□□ 2.11
MMP28-203ENST00000612672 DIS3Q9Y2L1 958 aaKnown RBP28.23■■■□□ 2.11
MMP28-203ENST00000612672 RIPK3Q9Y572 518 aa28.23■■■□□ 2.11
MMP28-203ENST00000612672 ADCY6O43306 1168 aa28.22■■■□□ 2.11
MMP28-203ENST00000612672 AKR1A1P14550 325 aa28.22■■■□□ 2.11
MMP28-203ENST00000612672 RAG1P15918 1043 aa28.22■■■□□ 2.11
MMP28-203ENST00000612672 HNRNPUQ00839 825 aaKnown RBP eCLIP28.22■■■□□ 2.11
MMP28-203ENST00000612672 GRIN2CQ14957 1233 aa28.22■■■□□ 2.11
MMP28-203ENST00000612672 CTR9Q6PD62 1173 aa28.22■■■□□ 2.11
MMP28-203ENST00000612672 SNAI1O95863 264 aaPredicted RBP28.21■■■□□ 2.11
MMP28-203ENST00000612672 CCSAPQ6IQ19 270 aaPredicted RBP28.21■■■□□ 2.11
MMP28-203ENST00000612672 KLHDC9Q8NEP7 349 aa28.21■■■□□ 2.11
MMP28-203ENST00000612672 PUS7LQ9H0K6 701 aaKnown RBP28.21■■■□□ 2.11
MMP28-203ENST00000612672 TMEM39AQ9NV64 488 aa28.21■■■□□ 2.11
MMP28-203ENST00000612672 RAD21O60216 631 aa28.2■■■□□ 2.1
MMP28-203ENST00000612672 ATP5JP18859 108 aa28.2■■■□□ 2.1
MMP28-203ENST00000612672 ACLYP53396 1101 aa28.2■■■□□ 2.1
MMP28-203ENST00000612672 FPGSQ05932 587 aa28.2■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms