RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 BMP3P12645 472 aa19.44■□□□□ 0.7
CCDC28A-202ENST00000611852 DSG3P32926 999 aa19.44■□□□□ 0.7
CCDC28A-202ENST00000611852 SLC1A4P43007 532 aa19.44■□□□□ 0.7
CCDC28A-202ENST00000611852 CAP1Q01518 475 aa19.44■□□□□ 0.7
CCDC28A-202ENST00000611852 RASGRP2Q7LDG7 609 aa19.44■□□□□ 0.7
CCDC28A-202ENST00000611852 CHST3Q7LGC8 479 aa19.44■□□□□ 0.7
CCDC28A-202ENST00000611852 CD99L2Q8TCZ2 262 aa19.44■□□□□ 0.7
CCDC28A-202ENST00000611852 ERO1AQ96HE7 468 aa19.44■□□□□ 0.7
CCDC28A-202ENST00000611852 MORF4L1Q9UBU8 362 aa19.44■□□□□ 0.7
CCDC28A-202ENST00000611852 MYPNQ86TC9 1320 aa19.44■□□□□ 0.7
CCDC28A-202ENST00000611852 ADCK5Q3MIX3 580 aa19.43■□□□□ 0.7
CCDC28A-202ENST00000611852 CHMP4CQ96CF2 233 aa19.43■□□□□ 0.7
CCDC28A-202ENST00000611852 MTMR7Q9Y216 660 aa19.43■□□□□ 0.7
CCDC28A-202ENST00000611852 IFIT3O14879 490 aaKnown RBP19.42■□□□□ 0.7
CCDC28A-202ENST00000611852 CNMDO75829 334 aa19.42■□□□□ 0.7
CCDC28A-202ENST00000611852 MCM5P33992 734 aa19.42■□□□□ 0.7
CCDC28A-202ENST00000611852 KRT32Q14532 448 aa19.42■□□□□ 0.7
CCDC28A-202ENST00000611852 IFIT1BQ5T764 474 aaKnown RBP19.42■□□□□ 0.7
CCDC28A-202ENST00000611852 COL13A1Q5TAT6 717 aaPredicted RBP19.42■□□□□ 0.7
CCDC28A-202ENST00000611852 PNMA1Q8ND90 353 aa19.42■□□□□ 0.7
CCDC28A-202ENST00000611852 DCAF4Q8WV16 495 aa19.42■□□□□ 0.7
CCDC28A-202ENST00000611852 ATG4CQ96DT6 458 aa19.42■□□□□ 0.7
CCDC28A-202ENST00000611852 PAGR1Q9BTK6 254 aa19.42■□□□□ 0.7
CCDC28A-202ENST00000611852 ARHGAP39Q9C0H5 1083 aa19.42■□□□□ 0.7
CCDC28A-202ENST00000611852 KAT14Q9H8E8 782 aa19.42■□□□□ 0.7
CCDC28A-202ENST00000611852 PPP1R9AQ9ULJ8 1098 aa19.42■□□□□ 0.7
CCDC28A-202ENST00000611852 ADAMTS5Q9UNA0 930 aa19.42■□□□□ 0.7
CCDC28A-202ENST00000611852 RABGAP1Q9Y3P9 1069 aa19.42■□□□□ 0.7
CCDC28A-202ENST00000611852 SNX14Q9Y5W7 946 aa19.42■□□□□ 0.7
CCDC28A-202ENST00000611852 PRC1O43663 620 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 PDHBP11177 359 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 CTGFP29279 349 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 KIF22Q14807 665 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 SART3Q15020 963 aaKnown RBP19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 GPRC5AQ8NFJ5 357 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 IGDCC4Q8TDY8 1250 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 NEK1Q96PY6 1258 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 SLF1Q9BQI6 1058 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 MTA3Q9BTC8 594 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 BTBD7Q9P203 1132 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 FEM1BQ9UK73 627 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 A0A0G2JMZ2 1700 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 ZSWIM8A7E2V4 1837 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 ERICH2A1L162 156 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 TMEM232C9JQI7 657 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 SNHG28P0DPA3 235 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 ERVK-9P63128 1117 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 ERVK-24P63145 666 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 Q3C1V9 767 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 C8orf34Q49A92 452 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 SAMD1Q6SPF0 538 aaPredicted RBP19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 KCTD1Q719H9 257 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 MB21D1Q8N884 522 aa19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 PRPF38AQ8NAV1 312 aaKnown RBP19.41■□□□□ 0.7
CCDC28A-202ENST00000611852 ECM2O94769 699 aaPredicted RBP19.4■□□□□ 0.7
CCDC28A-202ENST00000611852 PSMC4P43686 418 aa19.4■□□□□ 0.7
CCDC28A-202ENST00000611852 WTAPQ15007 396 aa19.4■□□□□ 0.7
CCDC28A-202ENST00000611852 TMEM67Q5HYA8 995 aa19.4■□□□□ 0.7
CCDC28A-202ENST00000611852 CTU1Q7Z7A3 348 aaKnown RBP19.4■□□□□ 0.7
CCDC28A-202ENST00000611852 TRIM47Q96LD4 638 aa19.4■□□□□ 0.7
CCDC28A-202ENST00000611852 SENP2Q9HC62 589 aa19.4■□□□□ 0.7
CCDC28A-202ENST00000611852 ISY1Q9ULR0 285 aaKnown RBP19.4■□□□□ 0.7
CCDC28A-202ENST00000611852 VWA5AO00534 786 aa19.39■□□□□ 0.69
CCDC28A-202ENST00000611852 PLA2G6O60733 806 aa19.39■□□□□ 0.69
CCDC28A-202ENST00000611852 EIF5BO60841 1220 aaKnown RBP19.39■□□□□ 0.69
CCDC28A-202ENST00000611852 SEC24BO95487 1268 aa19.39■□□□□ 0.69
CCDC28A-202ENST00000611852 STAT2P52630 851 aa19.39■□□□□ 0.69
CCDC28A-202ENST00000611852 CCDC96Q2M329 555 aa19.39■□□□□ 0.69
CCDC28A-202ENST00000611852 OTOP1Q7RTM1 612 aa19.39■□□□□ 0.69
CCDC28A-202ENST00000611852 TMEM87BQ96K49 555 aa19.39■□□□□ 0.69
CCDC28A-202ENST00000611852 EFCC1Q9HA90 598 aa19.39■□□□□ 0.69
CCDC28A-202ENST00000611852 FRMPD2Q68DX3 1309 aaPredicted RBP19.38■□□□□ 0.69
CCDC28A-202ENST00000611852 ZNF543Q08ER8 600 aa19.38■□□□□ 0.69
CCDC28A-202ENST00000611852 ARHGEF6Q15052 776 aa19.38■□□□□ 0.69
CCDC28A-202ENST00000611852 DHX32Q7L7V1 743 aaKnown RBP19.38■□□□□ 0.69
CCDC28A-202ENST00000611852 FAM160B2Q86V87 743 aa19.38■□□□□ 0.69
CCDC28A-202ENST00000611852 CHURC1Q8WUH1 139 aa19.38■□□□□ 0.69
CCDC28A-202ENST00000611852 KIFC2Q96AC6 838 aa19.38■□□□□ 0.69
CCDC28A-202ENST00000611852 LY9Q9HBG7 655 aa19.38■□□□□ 0.69
CCDC28A-202ENST00000611852 GPHNQ9NQX3 736 aaPredicted RBP19.38■□□□□ 0.69
CCDC28A-202ENST00000611852 TRIM17Q9Y577 477 aa19.38■□□□□ 0.69
CCDC28A-202ENST00000611852 MGAMO43451 1857 aa19.38■□□□□ 0.69
CCDC28A-202ENST00000611852 COL11A1P12107 1806 aaPredicted RBP19.37■□□□□ 0.69
CCDC28A-202ENST00000611852 WDR19Q8NEZ3 1342 aa19.37■□□□□ 0.69
CCDC28A-202ENST00000611852 SH2B2O14492 632 aaPredicted RBP19.37■□□□□ 0.69
CCDC28A-202ENST00000611852 FMNL1O95466 1100 aaPredicted RBP19.37■□□□□ 0.69
CCDC28A-202ENST00000611852 HMGB1P09429 215 aaKnown RBP19.37■□□□□ 0.69
CCDC28A-202ENST00000611852 FCGRTP55899 365 aa19.37■□□□□ 0.69
CCDC28A-202ENST00000611852 EXOSC10Q01780 885 aaKnown RBP19.37■□□□□ 0.69
CCDC28A-202ENST00000611852 IKQ13123 557 aaPredicted RBP19.37■□□□□ 0.69
CCDC28A-202ENST00000611852 TTBK2Q6IQ55 1244 aa19.37■□□□□ 0.69
CCDC28A-202ENST00000611852 REPS2Q8NFH8 660 aa19.37■□□□□ 0.69
CCDC28A-202ENST00000611852 JAKMIP1Q96N16 626 aaKnown RBP19.37■□□□□ 0.69
CCDC28A-202ENST00000611852 PORCNQ9H237 461 aa19.37■□□□□ 0.69
CCDC28A-202ENST00000611852 GNRH1P01148 92 aa19.36■□□□□ 0.69
CCDC28A-202ENST00000611852 CCNA1P78396 465 aa19.36■□□□□ 0.69
CCDC28A-202ENST00000611852 TMEM132BQ14DG7 1078 aa19.36■□□□□ 0.69
CCDC28A-202ENST00000611852 GPATCH4Q5T3I0 446 aaKnown RBP19.36■□□□□ 0.69
CCDC28A-202ENST00000611852 BTNL9Q6UXG8 535 aa19.36■□□□□ 0.69
CCDC28A-202ENST00000611852 LRRC2Q9BYS8 371 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms