RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 SGPL1O95470 568 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 XRCC5P13010 732 aaKnown RBP13.69□□□□□ -0.22
LINC00539-204ENST00000608957 PTPREP23469 700 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 MAP2K5Q13163 448 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 ALX1Q15699 326 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 MCMDC2Q4G0Z9 681 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 FAM83BQ5T0W9 1011 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 MAP3K21Q5TCX8 1036 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 REPS2Q8NFH8 660 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 NPLOC4Q8TAT6 608 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 NKX2-3Q8TAU0 364 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 NACAP1Q9BZK3 213 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 SPATC1LQ9H0A9 340 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.69□□□□□ -0.22
LINC00539-204ENST00000608957 MTMR4Q9NYA4 1195 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 HOXC10Q9NYD6 342 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 FLRT1Q9NZU1 646 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 ADAMTS5Q9UNA0 930 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 MCM3APO60318 1980 aa13.69□□□□□ -0.22
LINC00539-204ENST00000608957 SEC24BO95487 1268 aa13.68□□□□□ -0.22
LINC00539-204ENST00000608957 NDUFB10O96000 172 aa13.68□□□□□ -0.22
LINC00539-204ENST00000608957 HSPD1P10809 573 aaKnown RBP13.68□□□□□ -0.22
LINC00539-204ENST00000608957 RGS2P41220 211 aa13.68□□□□□ -0.22
LINC00539-204ENST00000608957 CCNA1P78396 465 aa13.68□□□□□ -0.22
LINC00539-204ENST00000608957 GRB14Q14449 540 aa13.68□□□□□ -0.22
LINC00539-204ENST00000608957 TMEM132BQ14DG7 1078 aa13.68□□□□□ -0.22
LINC00539-204ENST00000608957 PRPF38BQ5VTL8 546 aaKnown RBP13.68□□□□□ -0.22
LINC00539-204ENST00000608957 SAMD1Q6SPF0 538 aaPredicted RBP13.68□□□□□ -0.22
LINC00539-204ENST00000608957 ZNF444Q8N0Y2 327 aaPredicted RBP13.68□□□□□ -0.22
LINC00539-204ENST00000608957 NEDD1Q8NHV4 660 aa13.68□□□□□ -0.22
LINC00539-204ENST00000608957 DEFB118Q96PH6 123 aa13.68□□□□□ -0.22
LINC00539-204ENST00000608957 APBA2Q99767 749 aa13.68□□□□□ -0.22
LINC00539-204ENST00000608957 CRISPLD2Q9H0B8 497 aa13.68□□□□□ -0.22
LINC00539-204ENST00000608957 UPF2Q9HAU5 1272 aaKnown RBP13.68□□□□□ -0.22
LINC00539-204ENST00000608957 GOPCQ9HD26 462 aa13.68□□□□□ -0.22
LINC00539-204ENST00000608957 CLIP2Q9UDT6 1046 aa13.68□□□□□ -0.22
LINC00539-204ENST00000608957 ANAPC4Q9UJX5 808 aa13.68□□□□□ -0.22
LINC00539-204ENST00000608957 SLC15A5A6NIM6 579 aa13.67□□□□□ -0.22
LINC00539-204ENST00000608957 F5H6K3 240 aa13.67□□□□□ -0.22
LINC00539-204ENST00000608957 IGHA2P01877 340 aa13.67□□□□□ -0.22
LINC00539-204ENST00000608957 FGAP02671 866 aa13.67□□□□□ -0.22
LINC00539-204ENST00000608957 ERCC3P19447 782 aa13.67□□□□□ -0.22
LINC00539-204ENST00000608957 MFAP1P55081 439 aaKnown RBP13.67□□□□□ -0.22
LINC00539-204ENST00000608957 TFAP4Q01664 338 aa13.67□□□□□ -0.22
LINC00539-204ENST00000608957 KLRC3Q07444 240 aa13.67□□□□□ -0.22
LINC00539-204ENST00000608957 CACNB2Q08289 660 aaPredicted RBP13.67□□□□□ -0.22
LINC00539-204ENST00000608957 WDR78Q5VTH9 848 aa13.67□□□□□ -0.22
LINC00539-204ENST00000608957 TICAM2Q86XR7 235 aa13.67□□□□□ -0.22
LINC00539-204ENST00000608957 CCAR1Q8IX12 1150 aaKnown RBP13.67□□□□□ -0.22
LINC00539-204ENST00000608957 LRRC47Q8N1G4 583 aaKnown RBP13.67□□□□□ -0.22
LINC00539-204ENST00000608957 MKL1Q969V6 931 aa13.67□□□□□ -0.22
LINC00539-204ENST00000608957 NBPF3Q9H094 633 aa13.67□□□□□ -0.22
LINC00539-204ENST00000608957 PPP1R9AQ9ULJ8 1098 aa13.67□□□□□ -0.22
LINC00539-204ENST00000608957 CCDC171Q6TFL3 1326 aa13.66□□□□□ -0.22
LINC00539-204ENST00000608957 RPTORQ8N122 1335 aa13.66□□□□□ -0.22
LINC00539-204ENST00000608957 RAD21O60216 631 aa13.66□□□□□ -0.22
LINC00539-204ENST00000608957 NMT2O60551 498 aa13.66□□□□□ -0.22
LINC00539-204ENST00000608957 FGRP09769 529 aa13.66□□□□□ -0.22
LINC00539-204ENST00000608957 PRKAR2AP13861 404 aaKnown RBP13.66□□□□□ -0.22
LINC00539-204ENST00000608957 ZKSCAN1P17029 563 aaPredicted RBP13.66□□□□□ -0.22
LINC00539-204ENST00000608957 CHMLP26374 656 aa13.66□□□□□ -0.22
LINC00539-204ENST00000608957 CCND3P30281 292 aaPredicted RBP13.66□□□□□ -0.22
LINC00539-204ENST00000608957 MNX1P50219 401 aaPredicted RBP13.66□□□□□ -0.22
LINC00539-204ENST00000608957 PDE4BQ07343 736 aa13.66□□□□□ -0.22
LINC00539-204ENST00000608957 RASGRP2Q7LDG7 609 aa13.66□□□□□ -0.22
LINC00539-204ENST00000608957 MB21D1Q8N884 522 aa13.66□□□□□ -0.22
LINC00539-204ENST00000608957 SHCBP1Q8NEM2 672 aa13.66□□□□□ -0.22
LINC00539-204ENST00000608957 IL25Q9H293 177 aa13.66□□□□□ -0.22
LINC00539-204ENST00000608957 IL17RBQ9NRM6 502 aa13.66□□□□□ -0.22
LINC00539-204ENST00000608957 ZNF214Q9UL59 606 aaPredicted RBP13.66□□□□□ -0.22
LINC00539-204ENST00000608957 LCTP09848 1927 aa13.66□□□□□ -0.22
LINC00539-204ENST00000608957 ZMYM6O95789 1325 aa13.65□□□□□ -0.22
LINC00539-204ENST00000608957 VWA5AO00534 786 aa13.65□□□□□ -0.22
LINC00539-204ENST00000608957 COBLO75128 1261 aa13.65□□□□□ -0.22
LINC00539-204ENST00000608957 FARP2O94887 1054 aaPredicted RBP13.65□□□□□ -0.22
LINC00539-204ENST00000608957 TTLL1O95922 423 aa13.65□□□□□ -0.22
LINC00539-204ENST00000608957 HOXC6P09630 235 aa13.65□□□□□ -0.22
LINC00539-204ENST00000608957 TSPY3P0CV98 308 aa13.65□□□□□ -0.22
LINC00539-204ENST00000608957 TSPY8P0CW00 308 aa13.65□□□□□ -0.22
LINC00539-204ENST00000608957 ADORA2AP29274 412 aa13.65□□□□□ -0.22
LINC00539-204ENST00000608957 PLS1Q14651 629 aa13.65□□□□□ -0.22
LINC00539-204ENST00000608957 DIS3LQ8TF46 1054 aaKnown RBP13.65□□□□□ -0.22
LINC00539-204ENST00000608957 ZNF287Q9HBT7 754 aa13.65□□□□□ -0.22
LINC00539-204ENST00000608957 CWC22Q9HCG8 908 aaKnown RBP13.65□□□□□ -0.22
LINC00539-204ENST00000608957 HMX1Q9NP08 348 aaPredicted RBP13.65□□□□□ -0.22
LINC00539-204ENST00000608957 CEP290O15078 2479 aa13.65□□□□□ -0.22
LINC00539-204ENST00000608957 HIP1O00291 1037 aa13.64□□□□□ -0.23
LINC00539-204ENST00000608957 ORC4O43929 436 aa13.64□□□□□ -0.23
LINC00539-204ENST00000608957 TFRCP02786 760 aaKnown RBP13.64□□□□□ -0.23
LINC00539-204ENST00000608957 SLC3A2P08195 630 aaKnown RBP13.64□□□□□ -0.23
LINC00539-204ENST00000608957 NOVP48745 357 aa13.64□□□□□ -0.23
LINC00539-204ENST00000608957 HAND2P61296 217 aa13.64□□□□□ -0.23
LINC00539-204ENST00000608957 NCAPG2Q86XI2 1143 aa13.64□□□□□ -0.23
LINC00539-204ENST00000608957 TRMT44Q8IYL2 757 aaKnown RBP13.64□□□□□ -0.23
LINC00539-204ENST00000608957 GMCL1P1Q8NEA9 526 aa13.64□□□□□ -0.23
LINC00539-204ENST00000608957 TRPV1Q8NER1 839 aa13.64□□□□□ -0.23
LINC00539-204ENST00000608957 SLF1Q9BQI6 1058 aa13.64□□□□□ -0.23
LINC00539-204ENST00000608957 ESYT1Q9BSJ8 1104 aa13.64□□□□□ -0.23
LINC00539-204ENST00000608957 IVNS1ABPQ9Y6Y0 642 aa13.64□□□□□ -0.23
LINC00539-204ENST00000608957 SLFN13Q68D06 897 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms